Query= MSMg01no127_p24.b1 MSMg01no127_p24.b1 CHROMAT_FILE:
MSMg01no127_p24.b1 PHD_FILE: MSMg01no127_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
(373 letters)
>mm_chr9_9102999_9103772
Length = 774
Score = 694 bits (359), Expect = 0.0
Identities = 368/371 (99%), Gaps = 1/371 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctgctctggtgacagaggctttccttgtgc-tagcttcatcgctcaatttgg 62
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 574 ggaattatctgctctggtgagagaggctttccttgtgcatagcttcatcgctcaatttgg 515
Query: 63 aagtactaacatggctagggaggtgactgaactgttaaagaatgcctcaccctggtttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aagtactaacatggctagggaggtgactgaactgttaaagaatgcctcaccctggtttga 455
Query: 123 cttatctgcccagtagttgcatgcataggacaacttctggctgtttccatccatcttgtc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cttatctgcccagtagttgcatgcataggacaacttctggctgtttccatccatcttgtc 395
Query: 183 tggcaccaccagcacccagctctttgtcacatggattctagggaacatactcacagcctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tggcaccaccagcacccagctctttgtcacatggattctagggaacatactcacagcctt 335
Query: 243 gcattaggaaagcaatcacacagagaatcatgttccctcttactgtatgttattcattta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcattaggaaagcaatcacacagagaatcatgttccctcttactgtatgttattcattta 275
Query: 303 ctcattgaacttttgtctctgctgctttggttgatgcttatccctgtgacggtggacatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctcattgaacttttgtctctgctgctttggttgatgcttatccctgtgacggtggacatc 215
Query: 363 ttcctggaaca 373
|||||||||||
Sbjct: 214 ttcctggaaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 774
Length adjustment: 9
Effective length of query: 364
Effective length of database: 765
Effective search space: 278460
Effective search space used: 278460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_p24.g1 MSMg01no127_p24.g1 CHROMAT_FILE:
MSMg01no127_p24.g1 PHD_FILE: MSMg01no127_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
(628 letters)
>mm_chr9_9009791_9010818
Length = 1028
Score = 1145 bits (592), Expect = 0.0
Identities = 619/628 (98%)
Strand = Plus / Plus
Query: 1 ctgaatggtctcctttgactccacagtacattgtgcatacccacaccatctcccataata 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctgaatggtctcctttgactccacagtacattgtgcatgcccacaccatctcccataata 260
Query: 61 atacaaatatgtatatttatgatttaaagaaaaatcacaggataataacactagataaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaaatatgtatatttatgatttaaagaaaaatcacaggataataacactagataaag 320
Query: 121 aaaagctaataacaataaaggccaaattactgaagaaaatatgtcttaggggttttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagctaataacaataaaggccaaattactgaagaaaatatgtcttaggggttttattt 380
Query: 181 tattttattttatttttgcctgaattagattcaatttcctcagagaagcattcaactgtt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ggttttattttatttttgcctgaattagattcaatttcttcagagaagcattcaactgtt 440
Query: 241 tggtatttctgcattgtacgtctagtatacagacaattaagagtagaaaagctgacactg 300
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tggtatttctgcattgtacttctagtatacagacaattaagagtagataagctgacactg 500
Query: 301 tattttgattcaaagaaatttcttaggagcaattcttagtccaatttatatacacatttc 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tattttgattcaaagaaatttcttaggaccaattcttagtccaatttatatacacatttc 560
Query: 361 actttatctgaaaattctggagattgaatttagaagaatctaggcctgttgatagaaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actttatctgaaaattctggagattgaatttagaagaatctaggcctgttgatagaaacc 620
Query: 421 cagtatcccatacacctagaagactcagacaagcaaatgtgaggttcatgctctccactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtatcccatacacctagaagactcagacaagcaaatgtgaggttcatgctctccactg 680
Query: 481 agttacatcaccaattctaatcaaggcaattcatcagtacaacaagtcacccatcataca 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 agttacatcaccaattctaatcaagacaattcatcagtacaacaagtcacccatcataca 740
Query: 541 aacaaaaagtcatctatcatttatctctctattcatctatctatctacctattctcctat 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaaaaagtcatctaccatttatctctctattcatctatctatctacctattctcctat 800
Query: 601 catttatctacatgtctatccatctgtc 628
||||||||||||||||||||||||||||
Sbjct: 801 catttatctacatgtctatccatctgtc 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
