BAC Information

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BAC

Clone NameMSMg01-128B22
Chromosome9 (Build37)
Map Location 32,016,538 - 32,133,994
singlet/doubletdoublet
Overlap geneGrit, Kcnj5
Upstream geneAplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneKcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128B22.T7 (MSMg01no128_b22.b1)MSMg01-128B22.TJ (MSMg01no128_b22.g1)
ACCAG336476AG336477
length743749
length of high quality
(start - end)
577 (66 - 642)549 (75 - 623)
definitionCHROMAT_FILE: MSMg01no128_b22.b1 PHD_FILE: MSMg01no128_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:06 2005CHROMAT_FILE: MSMg01no128_b22.g1 PHD_FILE: MSMg01no128_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,133,655 - 32,133,994)(32,016,538 - 32,017,086)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGAATCCGCGGAATTCAT
CCAAGGTTTTCAGAATATAGTTAGAAGATGTAGTTTATTACAGACTAGCA
CAGGACACCCTCAAGGGTAAGAACAAACAATGAACAAAGAGAACATTGTG
TCAATGTACATTGTGGACAGACCACACTATTTCTAATAGACCTGAAATAC
ATAGTTGTCTTGGGTTCATATCTGTTGCTTTGATAAAATACTCTGAGCAA
AAGCAACTCATGGGAGGAAAGGGTTCATTTGGCTTATAACTTTCAAGTCA
CCTTCCATCATTGAGGTCGGGTCAGGAATTCAGGGCAGGAACTTGAAGCA
AAATAATACTGGTTGCCAGCTAACTCTCTGGCCTGCTCTCTGGCTCGTGT
TCATCTAGAATCCCTATACAACTCATACCCACTTGCCTAAGGATAGTGCT
ACCCACAGTGGGCTATGCTATTTTGTACCAATCATCAGTTAAGACAGTCT
CTCACAGACATGGCCAAAATCCAATCTGATGTAGTAAAACTCTCCATTGA
TACCCTCTCCTCAGGTAACTCTAAAATGTGTCAAGTTGACAGGTGAAGCT
AACTAGTACAATATCTTCCCCAAGGGGAATTTTCCTGTCCTGGTAATTGG
TGGATCAATTTTGACTGACTCTTACAGTAGTTGGCATTGATATGTATAGA
ATAAACACTGGTAGACCTGAAACCAGCTTTTACTTGTATTTTT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGTGGAGGATGCCTGGTTTCATAT
GCATTTTCATTTTTATTTTCTAAAGAAATTGTCTAATTGTGTAGGGCAGC
TTGGCGCAAACCTTCAATCTTCCTGCCTCTGCCTACCGAGCATTAGGATT
AGAGCTGTGTGCTAGCTGCATGGCTTGACATAACTGTTTAAAAAGAAAAT
CAAGCCGGGCGAGGTGGTGCTCACCTTTAATCCCAGCACTCCGGAGGCAG
AGGTAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT
CCAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAAACAA
AAAACAAACAAACCCAAAACAACCAGAATGAGTTTTGGAGGGAACAAGTA
GTGAAATCTTACATTCCTTTGTTTCTTTCTTTTTATGTTAATGAAAGAAG
GAGAAATTCTGGGCCCCAAAACTCATTTGAGCTGTTTTTCCTGAAGCACC
CTGAGAGATTAGGACTCATGGTTTGAAGCAGGAAGAGAGAAGCTTCCTGC
TCCCTGTGGAGGGTTCTGCCTGGCCTGCTCTCAGCACCCATCAGGCAGTG
CGTGCCACGCATGTGGGAGTGCGGAAGGTGAGCGGTCTTTCACAGGGTAC
CTATTTCATCATGGGTTAGGGATCGTTGTTCCAGTTTCTCTCGTGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_b22.b1 MSMg01no128_b22.b1 CHROMAT_FILE:
MSMg01no128_b22.b1 PHD_FILE: MSMg01no128_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:06 2005
         (577 letters)



>mm_chr9_32133655_32134631
          Length = 977

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagttagaagatgtagtttattacagactagcacaggacaccctcaagggtaagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tatagttagaagatgtagtttattacagactagcacaggacaccctcaagggtaagaaca 281

                                                                       
Query: 61  aacaatgaacaaagagaacattgtgtcaatgtacattgtggacagaccacactatttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aacaatgaacaaagagaacattgtgtcaatgtacattgtggacagaccacactatttcta 221

                                                                       
Query: 121 atagacctgaaatacatagttgtcttgggttcatatctgttgctttgataaaatactctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atagacctgaaatacatagttgtcttgggttcatatctgttgctttgataaaatactctg 161

                                                                       
Query: 181 agcaaaagcaactcatgggaggaaagggttcatttggcttataactttcaagtcaccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 160 agcaaaagcaactcatgggaggaaagggttcatttggcttataacttgcaagtcaccttc 101

                                                                       
Query: 241 catcattgaggtcgggtcaggaattcagggcaggaacttgaagcaaaataatactggttg 300
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 100 catcattgaggtcggggcaggaattcagggcaggaacttgaagcaaaagaatactggttg 41

                                                   
Query: 301 ccagctaactctctggcctgctctctggctcgtgttcatc 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  ccagctaactctctggcctgctctctggctcgtgttcatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no128_b22.g1 MSMg01no128_b22.g1 CHROMAT_FILE:
MSMg01no128_b22.g1 PHD_FILE: MSMg01no128_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:06 2005
         (549 letters)



>mm_chr9_32016338_32017286
          Length = 949

 Score = 1023 bits (529), Expect = 0.0
 Identities = 544/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtggaggatgcctggtttcatatgcattttcatttttattttctaaagaaattgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtggaggatgcctggtttcatatgcattttcatttttattttctaaagaaattgtct 260

                                                                       
Query: 61  aattgtgtagggcagcttggcgcaaaccttcaatcttcctgcctctgcctaccgagcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgtgtagggcagcttggcgcaaaccttcaatcttcctgcctctgcctaccgagcatt 320

                                                                       
Query: 121 aggattagagctgtgtgctagctgcatggcttgacataactgtttaaaaagaaaatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggattagagctgtgtgctagctgcatggcttgacataactgtttaaaaagaaaatcaag 380

                                                                       
Query: 181 ccgggcgaggtggtgctcacctttaatcccagcactccggaggcagaggtaggaggattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgggcgaggtggtgctcacctttaatcccagcactccggaggcagaggtaggaggattt 440

                                                                       
Query: 241 ctgagttcgaggccagcctggtctacagagtgagttccaggacagtcagggctacacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacaga 500

                                                                       
Query: 301 gaaaccctgtctcgaaaaaaaaacaaaaaacaaacaaacccaaaacaaccagaatgagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gaaaccctgtctcgaaaaaaaaacaaaaaacaaacaaacccaaaaaaaccagaatgagtt 560

                                                                       
Query: 361 ttggagggaacaagtagtgaaatcttacattcctttgtttctttctttttatgttaatga 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggagggaacaagtaatgaaatcttacattcctttgtttctttctttttatgttaatga 620

                                                                       
Query: 421 aagaaggagaaattctgggccccaaaactcatttgagctgtttttcctgaagcaccctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaaggagaaattctgggccccaaaactcatttgagctgtttttcctgaagcaccctga 680

                                                                       
Query: 481 gagattaggactcatggtttgaagcaggaagagagaagcttcctgctccctgtggagggt 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 gagtttaggactcatggtttgaagcaggaagagagaagcttcctgctccctgtggagggc 740

                    
Query: 541 tctgcctgg 549
           |||||||||
Sbjct: 741 tctgcctgg 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)