Query= MSMg01no128_c24.b1 MSMg01no128_c24.b1 CHROMAT_FILE:
MSMg01no128_c24.b1 PHD_FILE: MSMg01no128_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:12 2005
(572 letters)
>mm_chr9_78847818_78848790
Length = 973
Score = 992 bits (513), Expect = 0.0
Identities = 558/573 (97%), Gaps = 3/573 (0%)
Strand = Plus / Minus
Query: 1 cttgatttttttttcctgaaaactattgcccttagattacaaatgatccactgacctaaa 60
||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct: 906 cttga-ttttttttcctgaaaactattgcccttagattacaaatgatccactaagctgaa 848
Query: 61 aacaaaacaaaacaaaaatgaaacaaacaaacaaaaaacattcaaaaaaccaaaacataa 120
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 847 aacagaacaaaacaaaaataaaacaaacaaacaaaaaacattcaaaaaaacaaaaca-aa 789
Query: 121 caaacaaacaaaaccctagtagtactagattcttttcagtttcctacggtggcagaggat 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 caaacaaacaaaagtctagtagtactagattcttttcagtttcctacggtggcagaggat 729
Query: 181 ttggtttgggttcgggttttggttctgttgttgtggtgttggttgtttattccttatcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttggtttgggttcgggttttggttctgttgttgtggtgttggttgtttattccttatcac 669
Query: 241 acagactgaagtgaggcacagagaaggtatcattagtccagctggcctacccatttattc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acagactgaagtggggcacagagaaggtatcattagtccagctggcctacccatttattc 609
Query: 301 tagttgacatttttctcagattacatgaagtccaggaagagaggaaaaac-ccaccttat 359
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 608 cagttgacatttttctcagattacatgaagtccaggaagagaggaaaaacgccacattat 549
Query: 360 aacgggatcccctctgcctcccctgcatcaaggtgtttatattagagactgtcatgaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aacgggatcccctctgcctcccctgcatcaaggtgtttatattagagactgtcatgaaga 489
Query: 420 gaccaggcacctcttagtttgggtaagattctatcacatagtgtgtctaaatttacagag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaccaggcacctcttagtttgggtaagattctatcacatagtgtgtctaaatttacagag 429
Query: 480 tgaaaaagagacctaggcagagttttaaattgcattcttttaattttaggagctgtaacc 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 tgaaaaagagacctaggcagagttttaaattgtattcttttaattttaggagctgtaacc 369
Query: 540 tatggtcacccagtgccaaagatactgggattg 572
|||||||||||||||||||||||||||||||||
Sbjct: 368 tatggtcacccagtgccaaagatactgggattg 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_c24.g1 MSMg01no128_c24.g1 CHROMAT_FILE:
MSMg01no128_c24.g1 PHD_FILE: MSMg01no128_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:12 2005
(627 letters)
>mm_chr9_78785013_78786039
Length = 1027
Score = 1166 bits (603), Expect = 0.0
Identities = 621/627 (99%)
Strand = Plus / Plus
Query: 1 aataaagagatagaaatataagtaaatccccagaaacatgggaaggttacaaattcaata 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aataaagagatagaaatataagtaaatccccagaaacatgggaaggttaaaaattcaata 260
Query: 61 agtaaaatacagtgttctatggaaagtctcatcagagtggcacacatagagcaaagacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaaatacagtgttctatggaaagtctcatcagagtggcacacatagagcaaagacta 320
Query: 121 acagaggttaaaaatgaggtagaaaatttggaacattcagaggaaatgacaaatgaataa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaggttaaaaatgaggtagaaaatttggaacattcagaggaaatgacaaatgaataa 380
Query: 181 aaatatacaaatggaacacattagatctattgggccctctgcaaataacacacctatgaa 240
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 381 aaatatacaaatggaacacattagatctattgggcactctgaaaataacacacctatgaa 440
Query: 241 ccactggcataaaagtgcttttttgctaaatgcatcagaaacactttagataaaatcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactggcataaaagtgcttttttgctaaatgcatcagaaacactttagataaaatcaga 500
Query: 301 gcagaaattttcccatttctggtacatgatgcttggccaggcacaggaggcatttagaac 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gcagaaattttcccatttctggtacatgatgcttggccaggtacaggaggcatttagaac 560
Query: 361 atgaaatagggaagacaatacaagaaattccctatgtcgtattacagttaaagcaccaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgaaatagggaagacaatacaagaaattccctatgtcgtattacagttaaagcaccaac 620
Query: 421 tctacagaacaaaggaaaaaaattgaaaactgtaagacagaaacacaactcacatataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctacagaacaaaggaaaaaaattgaaaactgtaagacagaaacacaactcacatataaa 680
Query: 481 ggtaggcccatcagaattaaaaaactacttttacacataattcaagctctgagaaatgct 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 ggtaggcccatcagaattaaaaaactacttttacacataattcaagctctgaaaaatgct 740
Query: 541 aactcaactactatacagcaaatgctaactactatacccagcaaaactgtctgtcataat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactcaactactatacagcaaatgctaactactatacccagcaaaactgtctgtcataat 800
Query: 601 ggaagaaggaaaagatttttgtggtag 627
|||||||||||||||||||||||||||
Sbjct: 801 ggaagaaggaaaagatttttgtggtag 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
