BAC Information

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BAC

Clone NameMSMg01-128D09
Chromosome9 (Build37)
Map Location 69,779,493 - 69,779,808
singlet/doubletsinglet
Overlap genenone
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1
Downstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128D09.T7 (MSMg01no128_d09.b1)MSMg01-128D09.TJ (MSMg01no128_d09.g1)
ACCAG336544AG336545
length720723
length of high quality
(start - end)
316 (73 - 388)179 (169 - 347)
definitionCHROMAT_FILE: MSMg01no128_d09.b1 PHD_FILE: MSMg01no128_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:14 2005CHROMAT_FILE: MSMg01no128_d09.g1 PHD_FILE: MSMg01no128_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATGTCTCGGCAAGATGTTTGCTTTTGTCTTTCACTGCTATTGT
AAGAGAATCATTAGGTAATTCCAATTATTAACACATGTCAGGATAAGATG
CTAAACAACTTCTAACTGGCCTCTTTGAGCTTTGGGATGTAGGAAAAGAC
ACAGCCTAACTGTGGACCAAAAATATAATGGCTCAGCAGTTAATGTGTCC
TGCTCTTGCAGACAAATTGGGTTTAGTTCCCAGCATCCACATGGCAGCTC
ACAATCCCATGTAACTCCTGCACCTGTGGATCTGATGCCTTCTTCTGTCC
TCCAAGGGTTCCCATGGGCACATGGTGCACATAAGTTTCCATAGGTTCAC
ATACATATCACCCCACTAGATAGGTATGTAAATAAATAAACCTTTCAAAG
TACAATGGTCTCTTATCAAGAATTGACTGAAAAAGACAAAAGTAATCCTC
CCTTTTTCCAGCAGAAATGTCTCTGTTCATGACGCTGATGAGCCGTTTAC
TGCGCTAAGGAGCCCTGTGTTCCATATTCATGAAGTAGCAAACTAAGTTA
TTTAGCTTCATTAGACTTACCGAGCACCTTCTTTAGGGCCGAACGGACCT
CCCCTCTCGCGCAATTAACTCTGCCTGTATCTTCGTTTGAGCTCCGACGC
CCCAATTCCTTGATTGTCTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATCTATAAAACAGTGTTGGCATATACATTC
ACAGCATTTACTTGACCCCCTTGCAGAGTGTCTGTCATATGGAGCTGGAG
AGGTGGCTCAGTGGTTAAGAGCACTCGTTGCTCTTGCAAAGACTCGACTT
TGGGTCCCAGCAAATGTATCTTGTGGCTTCAAGATCACCTGAAACTCCAG
TTCCAGAGATCCAAAATCCTCTTTTGACTTCTGTGGGCACCCAACCACAC
ATCTCCATAAATAATTAATAAAACACACATGCACATACACACACACACTC
ACTTTTTTTTACACCTACATCACACATATATGTAGCAAGGAATTATGGCG
GTATTTACCCTTATAAGATGAAATATTTGAAAAGTGCCTTTGTCTGTTAT
TTATGGAAACACTTCATTTACTGAACAAAGGTATTCCTAAATTTAATAAC
CCTGAATTCTAGATTGCTGACTATAGCCCTGTCTCTAATAGTCAGAGCCT
CAATTATAAAGATGCTCTATACTCTACCGTGATCCTTCTCAATTTTTTCT
CATCACACCTGCCCTTTTAGGATCTTGATTTTTCGAATCTGTTAGCCCCC
CTATCTCTTTTTCCGAAGTCTACGGCCCCATGCACTGTGTGTATCTTTGC
CGTTTATAGCTGCGCCTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_d09.b1 MSMg01no128_d09.b1 CHROMAT_FILE:
MSMg01no128_d09.b1 PHD_FILE: MSMg01no128_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:14 2005
         (316 letters)



>mm_chr9_69779454_69780169
          Length = 716

 Score =  511 bits (264), Expect = e-149
 Identities = 303/316 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttgcttttgtctttcactgctattgtaagagaatcattaggtaattccaattattaac 60
           ||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||
Sbjct: 355 gtttgctttcgtctttcactgctattgtaagagaatcattagggaattataattattaac 296

                                                                       
Query: 61  acatgtcaggataagatgctaaacaacttctaactggcctctttgagctttgggatgtag 120
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 295 acatgtcaggataagatgctaaacaacttctaacaggcctctttgatctttgggatgtag 236

                                                                       
Query: 121 gaaaagacacagcctaactgtggaccaaaaatataatggctcagcagttaatgtgtcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gaaaagacacagcctaactgtggaccaaaaatataatggctcagcagttaatgtgtcctg 176

                                                                       
Query: 181 ctcttgcagacaaattgggtttagttcccagcatccacatggcagctcacaatcccatgt 240
           |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct: 175 ctcttgcagacaaattgggtttggttcccagcatccacatggcagctcgcaatcacatgt 116

                                                                       
Query: 241 aactcctgcacctgtggatctgatgccttcttctgtcctccaagggttcccatgggcaca 300
           |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 115 aactccagcacctgtagatctgatgtcttcttctgtcctccaagggttcccatgggctca 56

                           
Query: 301 tggtgcacataagttt 316
           ||||||||||||||||
Sbjct: 55  tggtgcacataagttt 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)