BAC Information

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BAC

Clone NameMSMg01-128E01
Chromosome9 (Build37)
Map Location 67,058,770 - 67,059,172
singlet/doubletsinglet
Overlap genenone
Upstream geneDapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
Downstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128E01.T7 (MSMg01no128_e01.b1)MSMg01-128E01.TJ (MSMg01no128_e01.g1)
ACCAG336575AG336576
length704700
length of high quality
(start - end)
407 (49 - 455)320 (77 - 396)
definitionCHROMAT_FILE: MSMg01no128_e01.b1 PHD_FILE: MSMg01no128_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:17 2005CHROMAT_FILE: MSMg01no128_e01.g1 PHD_FILE: MSMg01no128_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGCTACCACCACCACCACCTCTCACATTCCAATGTGGTAG
CTTACCAGGCCAAAGTCATGCAGCTTTCCAAGTCTGAATCATTTAGAAAA
CTGTAACTTCTCTTCTTCTTTAAAAAAAAAAAAAATCCTTTTCTAACAAT
GTTTTCCTTCATAGCTAGGGTTTCCCCAATACTTGGGGCTTTCTTACTCT
TTCTTCCAAGCTCCCTTCCCACTGTGGGTTGTTTGTTTCCTGTCTTAGTA
AGTGTTCTATTGGTGTGAAAACAGGCCATGAACGTGGTGATGGTTTGAAT
GGAAATGGCCCCCATAGGCTCCTAAGGAGGGAGTGGGACTATTAGGAGGT
GTAGTCTTGTTGGAATAGGCGCCACTTTGGAGTGTGCTAAATGTTGCCCT
TTATAAGAGATGCCATAATCATGGTGTCTCTTTACAGTAATAGAAACCCT
ATGATATCATGGGAACGTACCTTTCTTATAAAAGAAAGCATTTCACTATA
GCTTGCTTACAGTTTCTTAGGTTTTATGTGGTCCTAGCGCATGCTTGTAT
ACTTGATACCAGATATGCCACTAATATAATTGAGAGTTTTATATCCGGAT
TCCTTCATAGTCATTATTGAAAAATTGTATGTTAGATTTTTCTTGAGTTC
TCGA
TCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCTTTGTAACCGGGCTGGAA
GGGGCTCCGCTTCAAGCAGTGGCACAGTGACAGATGAGGGTACTGGCAGA
CTGGATATGATCAAAATACACTGAATACGTGTATGCAGTTGTCAAAAAAT
AAGTGAAAAATTATTTCAATAAATGCAAGAGATCCCTCAGTCAAGAAGGG
AGTTTTCCCAGGGTGATGCTTAGCCGTTGCAATCCAGATCTTCCAACCCT
TGAAATTTCCCCAAATGTGGTAAACTCTATTGTGTAGTTTGGGGACTATT
TTATAACTTTGCCTTATAAAAACTAAATAAAAATAATATAGCGCAAGAGA
GAACTCATATAATTCAGCTTGCCTGAGAGACTTTAGGATATATTGAATTG
GATGAGTCCCAGAGGATAAGAAGGGAAGTGAGAACAGAAAGTTACTTGAA
GAGATTATAATGTTTTTGTTTTCTTTCTGGACTCGAAGCCATCGCACAGT
GCAAACGTTGCCTCTTCAGGTGTACCTGTGTGCTACTCACTTTTGCTGCC
CCTGTGTGACACACAGTATGTGCGCCTATCTATGTGGCCTTACTCTATGG
TCATCTCCGTTACGGCTTTGACCATCAGACGATGTCTCTGTTTTTTTCAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_e01.b1 MSMg01no128_e01.b1 CHROMAT_FILE:
MSMg01no128_e01.b1 PHD_FILE: MSMg01no128_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:17 2005
         (407 letters)



>mm_chr9_67058732_67059537
          Length = 806

 Score =  704 bits (364), Expect = 0.0
 Identities = 394/404 (97%), Gaps = 2/404 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagctaccaccaccaccacctctcacattccaatgtggtagcttaccaggcca 64
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattccaagctaccaccaccactacctctcacattccaatgtggtagcttaccaggcca 382

                                                                       
Query: 65  aagtcatgcagctttccaagtctgaatcatttagaaaactgtaacttctcttcttcttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 aagtcatgcagctttccaagtctgaatcatttagaaaactgtaacttctcttcttcttt- 323

                                                                       
Query: 125 aaaaaaaaaaaaatccttttctaacaatgttttccttcatagctagggtttccccaatac 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 aaaaaaaaaaaaatccttttctaacaatgttttccttcatagcttgggtttccccaatac 263

                                                                       
Query: 185 ttggggctttcttactctttcttccaagctcccttcccactgtgggttgtttgtttcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttggggctttcttactctttcttccaagctcccttcccactgtgggttgtttgtttcctg 203

                                                                       
Query: 245 tcttagtaagtgttctattggtgtgaaaacaggccatgaacgtggtgatggtttgaatgg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 tcttagtaagtgttctattggtgtgaaaacaggccatgagcgtggtgatggtttgaatgg 143

                                                                       
Query: 305 aaatggcccccataggctcctaaggagggagtgggactattaggaggtgtagtcttgttg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 142 aaatggcccccataggctcctaaggagggagtgggactattaggaggtgtggtcttgttg 83

                                                       
Query: 365 gaataggcgccactt-tggagtgtgctaaatgttgccctttata 407
           ||||||| |   ||| ||||||||||||||||||||||||||||
Sbjct: 82  gaataggtgtggcttgtggagtgtgctaaatgttgccctttata 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)