BAC Information

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BAC

Clone NameMSMg01-128G16
Chromosome9 (Build37)
Map Location 121,382,464 - 121,382,814
singlet/doubletsinglet
Overlap geneTrak1
Upstream geneMyrip, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
Downstream geneCck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G16.T7 (MSMg01no128_g16.b1)MSMg01-128G16.TJ (MSMg01no128_g16.g1)
ACCAG336691AG336692
length704692
length of high quality
(start - end)
151 (126 - 276)330 (76 - 405)
definitionCHROMAT_FILE: MSMg01no128_g16.b1 PHD_FILE: MSMg01no128_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:30 2005CHROMAT_FILE: MSMg01no128_g16.g1 PHD_FILE: MSMg01no128_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGGAAATGGCGATTCACTTGGACCTAACAATAACCATCTGCAAT
TCCAGTTCCAGGAGATCCTTGCCCCCTTCTGACCTCTGTGAGCACCAGGC
ACACATGTGGTGCACCTACATACGTGCATGCAAAACACCTAAGCACATAG
AGTAAAACAAACAAACAAACAAACAAACAAAAACAAGCAAGCCAAAAAGA
CGTTGCCTTGCACAAAGTGGGGAGAGTCATTAGACTGTCCCCAGAGAGTC
CAGCCTCTACCACGCCATCTATCTCATCGAGTAACCCCCCCCTCTCGTAA
GCTGCGTGTTGTCTTTCCTGCCGGCCCGGACATTGTGGAGATGCGGCTGT
CCCAGACTGTTTGCTCTTGTAAGACAAGACTGATTAATGGTCTCACTGCT
GGCACGTACAGTTCCTTGTGTATGGCTGCTTCAGGGTTCTTCTCACGTCT
GTACAGTCACGTGTGGCATATGACCCTTGGCTCCTCACACACCTCTGCTG
TCACCTTTTGAATCAGCGAGATCTGACCTGTTTCCCTGTTTCTACTGTCT
CCGTCAGCCCCCATTAAACACTCTGGTATTTTTCCTACGCAAATAGTTGC
AACTGCTCTCCTGTACCATACACGAAACAGGAAAGACTGCTTGTTTCCCC
TACG
CCCGATGCAGTGGTAGCCTGGCGGCCGCCTGTCCAAAAATGTAGGTGAAC
TATAGAATTTCCGCGAAATTCTGCTAAGACTGTCAGGGTGCACACAGAGC
CTCCTCGCTCACCTATCCCAGCCGACACACAGGGCTGCTCGCCATTGGAG
AGCTGTCCTTTCAGTTGTAGGTGGCCCAGCTTCATCAAGGTCTGCACTAT
CCTGCCCCAATGGACTGTCTGTTCTCCAGACTTCTTTTCACGTCTCTGAC
TTGAAGTTACCTTGCATTTTGTCACAAGCTGTCAGGGTTAGAGCCTGACG
CGAAAAGAATGTATTTACACTCTGATGCGCAATCAGGCGGCTCCTCCGTG
TTCTGAGTGATTGATTTTTTTTTTCCTTCCCATTTCTAAAATTTTTATTT
GCAGGGAACCCTCAGTACTGGCAGTTTCTCTTGGTTCTGACACCAAAGTG
CAGACGGCACACACGCTAACTCTCTAATGACAGAGCTTATTCCTGGGACC
CAATGTCACAGCCAGTGTGATGTATGACCAGTTCTCACTGTAACAATAGG
ATCATGGGGAAGGTGACAGGACTGTTAACCCTATACACGGTGGAGGGTAA
GGGCCGAAGTCTCTGTACTCCTTCAGGTTATTCTGAACCAAAGTTTGTCA
AGCTGGATGGCTGCTGTTCCCTTTCCACTCTGAAGGGAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g16.g1 MSMg01no128_g16.g1 CHROMAT_FILE:
MSMg01no128_g16.g1 PHD_FILE: MSMg01no128_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:30 2005
         (330 letters)



>mm_chr9_121382281_121383014
          Length = 734

 Score =  551 bits (285), Expect = e-161
 Identities = 325/351 (92%), Gaps = 21/351 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagactgtcagggtgcacacagagc-----------------ctcctcgctcacctatcc 43
           |||||||||||||||||||||||||                 ||||||||||||||||  
Sbjct: 184 aagactgtcagggtgcacacagagccgccgtgtggcacaggtctcctcgctcacctatga 243

                                                                       
Query: 44  cagccgacacacagggctgctcgccattggagagctgtcctttcagttgtaggtggccca 103
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 244 cagccgacacacagggctgctcgccatcggagagctgtcctttcagttgtaggtgaccca 303

                                                                       
Query: 104 gcttcatcaaggtctgcactatcctgccccaatggactgtctgttctccagacttctttt 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gcttcatcaaggtctgcactatcctgccccaatggactgtctgttctccagacttctttt 363

                                                                       
Query: 164 cacgtctctgacttgaagttaccttgcattttgtcacaagctgtcagggttagagcctga 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cacgtctctgacttgaagttaccttgcattttgtcacaagctgtcagggttagagcctga 423

                                                                       
Query: 224 cgcgaaaagaatgtatttacactctgatgcgcaatcaggcggctcctccgtgttctgagt 283
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 424 cgcgaaaagaatgtatttacactctgatgcgcaatcaggcggcccctccgtgttctgagt 483

                                                              
Query: 284 gattgatttttt----ttttccttcccatttctaaaatttttatttgcagg 330
           ||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 484 gattgattttttctttttttccttcccatttctaaaatttttatttgcagg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 734
Length adjustment: 9
Effective length of query: 321
Effective length of database: 725
Effective search space:   232725
Effective search space used:   232725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)