BAC Information

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BAC

Clone NameMSMg01-128J09
Chromosome9 (Build37)
Map Location 95,395,385 - 95,563,629
singlet/doubletdoublet
Overlap gene2610101N10Rik, LOC100040097, Paqr9, Pcolce2
Upstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
Downstream geneTrpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128J09.T7 (MSMg01no128_j09.b1)MSMg01-128J09.TJ (MSMg01no128_j09.g1)
ACCAG336815AG336816
length716723
length of high quality
(start - end)
181 (125 - 305)136 (121 - 256)
definitionCHROMAT_FILE: MSMg01no128_j09.b1 PHD_FILE: MSMg01no128_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:44 2005CHROMAT_FILE: MSMg01no128_j09.g1 PHD_FILE: MSMg01no128_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,563,449 - 95,563,629)(95,395,385 - 95,395,520)
sequence
CTCACATTCXXXXXXXXXXXXXXXXXXXXXXXXCCATAGAGGATCCGCGG
AATTCAACTGTTTCCCAAACAGATTTCTTTGTCTACTACAGAACTCCAGG
TTTTACAGAGAAGCACTTGTCCCCACTGTCTTCCCAGCCCCGGTGGGCTG
GGATCCTCACAGGTGATCAGAGCTACTCACTTCCTTGTGTAAAACAGCAG
CCTGCACTCAGTCTTGACTTACCTCTTTCAATCACTACCTTTTCTGTATC
CTATAATTCCCCCACCTACCCCTCCAGTAAACTGCTAGCTAAATCAATAT
TCAAGATCCGCAGAACCTCCTTCATGCAACCATCACAGCCGAGCTAAAGT
CGTTACATTTCTCAGAGGTTGTTTTTCTAACCCTTGTAATGGTCTTTCTT
GAGGTTTGCCCACTGTGCTGGGTCTCTATTAATCCTCTCAATACAGGCAT
CAGTATTCTATGGTTTCCATTTTCTCCTCTGGAACATCCAGACTGCTACT
ATATAGGTAATTACACAATACCGAATAGATTGCATTCTATTTGTGTATAA
CCTATATTACCTTACCATTATTAATGTGTGTGTGTGTGCGCGCTAGCATT
AGCCTGTGAGAGAAAAAAACTTCCCCTTTTTTTCCCACCCCTTCTCCCCC
CCCCCCCCCCTTTTCTCTCTCTTATCCACCATTTTAAGCACCCCCCCCCT
TTTTTCTCTTTTCCTG
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCAAAATTCAAAGGGATTCTCCTGGGAATACAGATGCTA
GAAGAAAATACAGTTTACCCCCTCTATAAGCCAGAAATGGAACAGAAAGG
AAAAGCTTGTTTAAAAACACAGTAATTGTGAGGAAAGACTGACAACTGAT
TATAACAACAGTTTTTACATGGAAGAATAAAACCAGAAAGAGAATAAAAA
GAAATAAAACGCAGGTAGGGGGCTGGTGAACTGCATTGCCACTATAGGAA
TTGCAAATTCAAACACTCTTGTATCATTTTTCACACTACAGACTGGCAAA
AACTCCCTTATTATACCCTGCCACCTGTGGGCGGTGATATCACTAATCCA
TTACAGATCCACAACATTCTGTCCCTGTCTGACAGACAAGTACAGAAGAC
CCACATTTATTATTTTACCATTCCTACAATTTCCCTTTCATGAATATGCC
CTCCTCTGGTAAACTATAAGAAACATCTAGATGCATCTGTGTATATAACA
TCATTCATAACTACTCTACTTGCAATATAATGTCTAATGAGACCATTCTC
TATCCCCACCAGGACTTTATAATCTTATGAAGCTTCACATAAGTTCCCAT
GTTTCTTTCCTTACAATATTCCCCATTGCCTTTTATTTTCATTTAACACC
CTATTTGTTATCACTTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_j09.b1 MSMg01no128_j09.b1 CHROMAT_FILE:
MSMg01no128_j09.b1 PHD_FILE: MSMg01no128_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:44 2005
         (181 letters)



>mm_chr9_95563249_95563829
          Length = 581

 Score =  296 bits (153), Expect = 5e-85
 Identities = 174/181 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtcttcccagccccggtgggctgggatcctcacaggtgatcagagctactcacttcc 60
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 actgtcttcccagccccgttgggctgtgatcctcacaggtgatcagagctactcacttcc 322

                                                                       
Query: 61  ttgtgtaaaacagcagcctgcactcagtcttgacttacctctttcaatcactaccttttc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttgtgtaaaacagcagcctgcactcagtcttgacttacctctttcaatcattaccttttc 262

                                                                       
Query: 121 tgtatcctataattcccccacctacccctccagtaaactgctagctaaatcaatattcaa 180
           ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||
Sbjct: 261 tgtatcctataattcccccacctgcccctccattaaactgctagttaaatcagtattcaa 202

            
Query: 181 g 181
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no128_j09.g1 MSMg01no128_j09.g1 CHROMAT_FILE:
MSMg01no128_j09.g1 PHD_FILE: MSMg01no128_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:44 2005
         (136 letters)



>mm_chr9_95395185_95395720
          Length = 536

 Score =  232 bits (120), Expect = 6e-66
 Identities = 132/136 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctataagccagaaatggaacagaaaggaaaagcttgtttaaaaacacagtaattgtg 60
           |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| 
Sbjct: 201 cctctataagccagaaatggaaaagaaaggaaaagcttggttaaaaacacagtaattgta 260

                                                                       
Query: 61  aggaaagactgacaactgattataacaacagtttttacatggaagaataaaaccagaaag 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaagactgacaactgattataaaaacagtttttacatggaagaataaaaccagaaag 320

                           
Query: 121 agaataaaaagaaata 136
           ||||||||||||||||
Sbjct: 321 agaataaaaagaaata 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)