Query= MSMg01no128_m11.b1 MSMg01no128_m11.b1 CHROMAT_FILE:
MSMg01no128_m11.b1 PHD_FILE: MSMg01no128_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:59 2005
(596 letters)
>mm_chr9_116653179_116654174
Length = 996
Score = 1027 bits (531), Expect = 0.0
Identities = 577/593 (97%), Gaps = 4/593 (0%)
Strand = Plus / Minus
Query: 6 gaattctggtcc--ttcccctgtggtggctgagaaatattaaaatatgattttgtaagca 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattctggtccaatt-ccctgtggtggctgagaaatattaaaatatgattttgtaagca 738
Query: 64 tctgtctgtcagtgtaggcttcttctaagaacttggatattgaattatttgacgttctga 123
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct: 737 tctgtctgtcagtgtaggcttcttctaagaacgtggatattgaattgtttgactttctga 678
Query: 124 gcttaaagtcagtgttttggtagaaatgtactcattgtcaatgcaaagtgcgttgtgata 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcttaaagtcagtgtttcggtagaaatgtactcattgtcaatgcaaagtgcgttgtgata 618
Query: 184 agactagttttagtttagaaaagatttttctgttgcgttgattttggcgcaacccgagta 243
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 617 agactagttttagtttagaaaagatttttctgttgcgttgactttggcacaacccgagta 558
Query: 244 acacagaaaataaaggtattaaagtgaaaaccttaagagaaatgctgttggcagttgtgg 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acatagaaaataaaggtattaaagtgaaaaccttaagagaaatgctgttggcagttgtgg 498
Query: 304 ggaacaaagtccatggtcatttgcccactttgttcaagtgcttgcttgaatgtcaagcca 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 ggaacaaagtccatggtcatttgcccactttgttcaagcgcttgcttgaatgtcaagcca 438
Query: 364 taagccacacgccatgcaagacattgattcatgtttatgctacaaatgatgcatatctaa 423
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taagccacatggtatgcaagacattgattcatgtttatgctacaaatgatgcatatctaa 378
Query: 424 gtctgacataatcaattttagataaatttagcaatttgtgattaatgcattaatttagtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtctgacataatcaattttagataaatttagcaatttgtgattaatgcattaatttagtc 318
Query: 484 aattaatcaaaaagactgatgacaagtacagatcttaatgtcaaatttctatttcttgtg 543
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 317 aattaatcaaaaagactgatgacaagtacagatcttaaagtcaaatttctatttcttgtg 258
Query: 544 acaagaattcatttaagattaatttttactttctgaattctgtggaggccagt 596
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 acaagaattcatttaagattaatttttac-ttctgaattctgtggaggccagt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_m11.g1 MSMg01no128_m11.g1 CHROMAT_FILE:
MSMg01no128_m11.g1 PHD_FILE: MSMg01no128_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:59 2005
(462 letters)
>mm_chr9_116548656_116549518
Length = 863
Score = 783 bits (405), Expect = 0.0
Identities = 446/460 (96%), Gaps = 1/460 (0%)
Strand = Plus / Plus
Query: 1 ttttctgcn-tatagtcaagggtctggcttcatctgagtggaggtccctaaaggggcagg 59
|||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 ttttctgcagtatagtcaagggtctggcttcatctgagtggaggtcactaaaagggcagg 260
Query: 60 gaattccgctggctgcaggtggctgggctgggctctgtctccattgctgctgctgctgcg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattccgctggctgcaggtggctgggctgggctctgtctccattgctgctgctgctgct 320
Query: 120 gtgagcttcagtatttaaaactggacatcagagaaggatctctgtttgctgagcttctgc 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gtgagcttcagtatttaaaactggacatcagagaaggatctcagtttgctgagcttctgc 380
Query: 180 tagtatttgaaatgagtttgaaatctttgaaggttcattcatttcccgataaaatcatgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtatttgaaatgagtttgaaatctttgaaggttcattcatttcccgataaaatcatgg 440
Query: 240 gactcttcacacccaacaaaacatgggcagtgccttgcactgaaagcacatactgaactc 299
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gactcttcacacccaacaaaacacaggcagtgccttgcactgaaagcacatactgaactc 500
Query: 300 gggtgtggggaaacaaactcaggtcccctggaagagcagcacgagcatgctcttaactgc 359
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 501 gggtgtggggaaacaaactcaggtcccctggaagagcagcaggagcgtgctcttaactgc 560
Query: 360 tgagccactactcctgcgataaacaggagattgagcaatgaccttcatttgtgctgcttt 419
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagccaccgctccagcgataaacaggagattgagcaatgaccttcatttgtgctgcttt 620
Query: 420 gccattgttacagggcatggccctttgactgtgaatcatc 459
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gccattgttacagggcttggccctttgactgtgaatcatc 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
