BAC Information

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BAC

Clone NameMSMg01-129J13
Chromosome9 (Build37)
Map Location 50,362,253 - 50,362,435
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam1, EG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2
Downstream geneTex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J13.T7 (MSMg01no129_j13.b1)MSMg01-129J13.TJ (MSMg01no129_j13.g1)
ACCAG337566AG337567
length713726
length of high quality
(start - end)
183 (121 - 303)56 (75 - 130)
definitionCHROMAT_FILE: MSMg01no129_j13.b1 PHD_FILE: MSMg01no129_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:04 2005CHROMAT_FILE: MSMg01no129_j13.g1 PHD_FILE: MSMg01no129_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCCAT
CTTTCCCAACAAAATCACTTGTAATTGTTGAAACTACCTGAGCAGGCGAG
GCACTTTTTCACTCGTATGGCCCTCAGCCCACCCTAGCTGTTCACATCAG
CCTAGCTGGATTGCTCCCTAGTCTCATGACCATTCTATTCTCTTCACTTA
GGATATTTCTCATCTCCTTCAGATGAAACTTGCATATGCAACTCAACCTT
CAAGTTCCAATTTCTGGGTCACCCGCTTCTTAAGCATCGAATTCCCATTT
CCTCTTTATCTACTCCGGAGAGCTTTCTGGCGGCCCTTATCTTGTTGTCC
TGTCCCCCCCCCCCCCACCGCACTTTACAATTTCTCCTGGTATTATCCTT
TGAATACAAAAAAAAAATAAACCTCCCCAGTGGGAGCCCCTAGTATGCTG
TCTTACTTACTATACCTCTTTACTATATAAGTCACTATGGTTAAATAACT
TTATAATTAACTTGTGCATATTGTTGCCATTTCTGGTATTTCTATAATTA
ACCTATCACTGCACACATATCCTTGAATTATCACCTCTTATATTATGCTA
CCGACCCACATATTACATGCTTTGCACACCGTCCCCCACTTTTGTCATTT
ATCACACTCCCTACCTCTTGTCTTTCTTATACCCCTTTTACTTGTCCCCC
ATCTGTCCACACC
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACCCGCGAAAATGCTCTGTTTAGGCCTGTACCTTGTTTTT
ATTTGGGTTGTGTATTTTGCCGCTATTTAGTTGTGGATCCTTTATATATT
TTGGATATTAGCCCTCTGCTGGATGTAGGGTTGGTGAAGATCTTTCCCTG
CTCTATAGGCCGTCATGTCCTTTGCCACTGAGAAGCTTCTCAGTTTCACG
AAGTCCCATTTCTTAATTGTTGATCTTAGTGTCTGCACTATTGGTGTTCT
GTTCACAAAGTTGTTTCCTGTCCCAATGCATTCCCGGCTATTCCCCTGAA
GCTTTTTTTTGTTACCCCCCCCCGCCCCTGCTGGGTACTTCTCACTACTG
CCTGTTATAATGCCGCTCTGAAATAGACAAAGAAAGAGGGACGCCCACAT
TCCCCTCTCTCTTTTTCCATGTCTTCGTCATTTTTCACATCTCCTCATTA
CTGCTTTCTCTGCCTGAGAAATCTATAGCTCCTTTTTCTTGCACTCCATC
CCACTTCTTTTCCTTTATCCTTATTCACCTACAAATCGTTACTCTTTCAT
CCTCAGGTAATTTTGTTATGTCCTCCTTTTCACCTTTTGCCTTTCACTCT
TATCCTATTCTATATCCCCCACTTTCTCTTTTTATGATGGTTCACAGTTA
TCTCGGCATTTCTTTTGTTGCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j13.b1 MSMg01no129_j13.b1 CHROMAT_FILE:
MSMg01no129_j13.b1 PHD_FILE: MSMg01no129_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:04 2005
         (183 letters)



>mm_chr9_50362053_50362635
          Length = 583

 Score =  325 bits (168), Expect = 1e-93
 Identities = 180/184 (97%), Gaps = 2/184 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctcagcccaccctagctgttcacat-cagcctagctggattgctccctagtctcatga 59
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 201 ccctcagcccaccctagctgttcac-tccagcctagctggattgctccctagtctcatga 259

                                                                       
Query: 60  ccattctattctcttcacttaggatatttctcatctccttcagatgaaacttgcatatgc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccattctattctcttcacttaggatatttctcatctccttcagatgaaacttgcatatgc 319

                                                                       
Query: 120 aactcaaccttcaagttccaatttctgggtcacccgcttcttaagcatcgaattcccatt 179
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 320 aactcaaccttcaagttccaatttctgggtcacctgcttcttaagcaccgaattcccatt 379

               
Query: 180 tcct 183
           ||||
Sbjct: 380 tcct 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)