Query= MSMg01no129_n10.b1 MSMg01no129_n10.b1 CHROMAT_FILE:
MSMg01no129_n10.b1 PHD_FILE: MSMg01no129_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:23 2005
(673 letters)
>mm_chr9_25104833_25105907
Length = 1075
Score = 1218 bits (630), Expect = 0.0
Identities = 657/668 (98%), Gaps = 8/668 (1%)
Strand = Plus / Minus
Query: 11 gaattcacacatacttccctgacttaggtcatgcatctgagaaactgaattctacttaac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gaattcacacatacttccctgacttaggtcatgcatctgagaaactgaattctacttaac 816
Query: 71 ag--aaaaaaaaaaaaacccag-aggaaaatgaaataaaaactatcactgaaaagctaca 127
|| ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 815 agaaaaaaaaaaaaaaa---agtaggaaaatgaaataaaaactatcactgaaaagctaca 759
Query: 128 gtgtattatacactgtgtattttatattacttactacagtacacatttttacctttatga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gtgtattatacactgtgtattttatattacttactacagtacacatttttacctttatga 699
Query: 188 gaccttacattaaattatgcactgaaaagaaccttaccttcagccacaccccaaggatac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaccttacattaaattatgcactgaaaagaaccttaccttcagccacaccccaaggatac 639
Query: 248 tgccttcctctgactcttttgccattaacttcaatgatagtattactacctaccacagca 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgccttcctctgactcttttgccattaacttcaatgatagtattactacctaccacagca 579
Query: 308 agaggtaaacggtcctataaaataaagtgatattgtaaacacatctctacagtactcaca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaggtaaacggtcctataaaataaagtgatattgtaaacacatctctacagtactcaca 519
Query: 368 attcaataataatttataatattcaacatactaacaaaaaattatctacattaactctta 427
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 518 attcaataataatttataatattcaacatattaacaaaaaattatctatattaactctta 459
Query: 428 ccagccaagcaataattatccagaaaattattactcaaacagtattaccaaagcatgtga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccagccaagcaataattatccagaaaattattactcaaacagtattaccaaagcatgtga 399
Query: 488 taaataactgctttttgggtgaaattttaagaataatgtactatgtatatattagtaaaa 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 taaataactgctttttgggtgaaattttaagaataatgtactatgtatatattagtcaaa 339
Query: 548 ttggttgtcaaaaattactgttaaaccatcccatattggacacagaataaaaaattacat 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttggttgtcaaaaattactgttaaaccatcccatattggacacagaataaaaaattacat 279
Query: 608 tgatattaagaaagaaaaaaaaa-ggactacaaatctatctcattattattcttaaca-t 665
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 278 tgatattaagaaagaaaaaaaaaaggactacaaatctatctcattattattcttaacaat 219
Query: 666 atgaggtg 673
||||||||
Sbjct: 218 atgaggtg 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1075
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1065
Effective search space: 706095
Effective search space used: 706095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_n10.g1 MSMg01no129_n10.g1 CHROMAT_FILE:
MSMg01no129_n10.g1 PHD_FILE: MSMg01no129_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:24 2005
(236 letters)
>mm_chr9_24958239_24958876
Length = 638
Score = 402 bits (208), Expect = e-117
Identities = 227/234 (97%), Gaps = 3/234 (1%)
Strand = Plus / Plus
Query: 1 tccatggggtagtgctcatttagaaagaaaagtaaaagaaaattatttttaaat-aaaaa 59
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 200 tccatggggtagtactcatttagaaagaaaagtaaaagaaaattatttttaaataaaaaa 259
Query: 60 aaaagataatttccagtatttgtggaatttgcttacttctcgtttttggtttttggggtt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 260 aaaagataatttccagtatttgtggaatttgcttacttctcgtttttggtttttgggttt 319
Query: 120 ttttttt--atcagcaagttaagggaaaaggcagcaggggggaaaagcatatactggttc 177
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttttttaatcagcaagttaagggaaaaggcagcaggggggaaaagcatatactggttc 379
Query: 178 attctgtgagattctagcttctaataattcaaaatctaggcactttatctgaaa 231
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 380 attctgtgagattctagcttctaaaaattcagaatctaggcactttatctgaaa 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 638
Length adjustment: 9
Effective length of query: 227
Effective length of database: 629
Effective search space: 142783
Effective search space used: 142783
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
