BAC Information

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BAC

Clone NameMSMg01-130A04
Chromosome9 (Build37)
Map Location 87,865,789 - 87,866,188
singlet/doubletsinglet
Overlap genenone
Upstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
Downstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A04.T7 (MSMg01no130_a04.b1)MSMg01-130A04.TJ (MSMg01no130_a04.g1)
ACCAG337874AG337875
length7131,174
length of high quality
(start - end)
645 (69 - 713)828 (92 - 919)
definitionCHROMAT_FILE: MSMg01no130_a04.b1 PHD_FILE: MSMg01no130_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:37 2005CHROMAT_FILE: MSMg01no130_a04.g1 PHD_FILE: MSMg01no130_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAA
TTCCAAGAGTTTCTTCTGTACCTAGAAAATTCAAGGCTAGCCTGAGTTAT
ATAAGACCAATGTTCTATTGCTGTGAAGAGAGAGCATGATCACGAGAACC
TTTATAAAAAAAAAACATTTAACTGGGATCTTATAGTTTCAGACCATTAT
CATCATAAGAAGCAGGGCAGCATATAGGTAGACATGATGTTGGAGAGGCA
GAATGGAGACAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
ACTGGACCTACCTTGCATTTTTGAAAACTTCAAAGCTCACCTCCAGTGAT
ACATTTCTTCTAACGAGGTCACACCTTCTAATCCTTTCAAATGGTGCTAC
TCCCTAGAGACCAAGCATTTAAATCTATGTGCCTATGGGGACCATTCTCA
TTCAACTATCATAACCACCTAAAAAAAATCCAAAATTAAAAATTCATTGG
TTTAAATGTTGTGCTACACATCCTAAAGATTATTAATTAATACACTCTGG
GAAGGGTAAGATTTAAAAAAAGACAATGGGAAAACCTATGATAAAAATAA
GATTAATAGGAGAAGAGTAATAATCAACTTTTTCCCAACAAATTTCTTTT
CTGGTCAGGGTTC
NNCCCGACTCTNNNNNNNTATCAAGTGATGCTGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTACCTGAGGAATA
CCGAATGGCAGAGAAGCACCTACCATAAATGTTCAACAGCCTTAATCATC
AGGGAAATGCAAATCAAAACAACCCTGAGATTCCTCCTCACACCAGTCAG
AATGGCTAAGTTGAAAAATTCAGGGAACAGCAGATTCTGGCGAGGATGTG
GAGAAAGAAGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCGGTTCCTCAAAAAATTGGACATAGTACT
ACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCC
CAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTCGAGGTC
CATCCTGAGTGAGGTAACACAATCACAAAGGAACTCACACAATATGTACT
CACTGATTTGTGGATATTAGCCCCAAAACTTAGGATACCCAAGATATAAG
ATACAATTTGCTAAATGCATGAAACTCAAGAAGAATGAAGACCAAAGTGT
GGACACTTTACCCCTTCTTAGAATTGGGAACAGAACACCCATGGAAGGAG
TTTCAGAGACAAATTTTGGAGCTGTGACGAAAGGATGGACCATCTAGAGA
CTGCTATATCCACGGATCCACCCCATAATCAGCTTCCAAACACTGACATC
ATTGATACCACTAGCAAGATCCCCAATGGAGGAGCTAGAGAAAGTACCCC
AGGCGCTAAAGGGATCTTTGACCCTATAGGTGGAACAACCTTATGAACTA
ACCCGTACCCCCGAGCTCTTGATCCTAGCTGCGTATGTATCAAAAGATGG
CCTAACCGGCCATCCCTTGGAAGAGAAGGCCATTGGACTTGCAAACTTAT
TTGCCCCAGTCCAGGGAAAACCAAGGCCAAAAAAGGGGGGGGGGGTTGAG
GAAATATGGGGAACATTTTCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a04.b1 MSMg01no130_a04.b1 CHROMAT_FILE:
MSMg01no130_a04.b1 PHD_FILE: MSMg01no130_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:37 2005
         (645 letters)



>mm_chr9_87865144_87866188
          Length = 1045

 Score =  727 bits (376), Expect = 0.0
 Identities = 394/400 (98%)
 Strand = Plus / Minus

                                                                        
Query: 246  gagagagagagagagagagagagagagagagagagagactggacctaccttgcatttttg 305
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1045 gagagagagagagagagagagagagagagagagagaggctggacctatcttgcatttttg 986

                                                                        
Query: 306  aaaacttcaaagctcacctccagtgatacatttcttctaacgaggtcacaccttctaatc 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  aaaacttcaaagctcacctccagtgatacatttcttctaacgaggtcacaccttctaatc 926

                                                                        
Query: 366  ctttcaaatggtgctactccctagagaccaagcatttaaatctatgtgcctatggggacc 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  ctttcaaatggtgctactccctagagaccaagcatttaaatctatgtgcctatggggacc 866

                                                                        
Query: 426  attctcattcaactatcataaccacctaaaaaaaatccaaaattaaaaattcattggttt 485
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  attctcattcaactattataaccacctaaaaaaaatccaaaattaaaaattcattggttt 806

                                                                        
Query: 486  aaatgttgtgctacacatcctaaagattattaattaatacactctgggaagggtaagatt 545
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 805  aaatgttgtgctacacatcctaaagattattaattaatacgctctgggaagggtaagatt 746

                                                                        
Query: 546  taaaaaaagacaatgggaaaacctatgataaaaataagattaataggagaagagtaataa 605
            | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745  ttaaaaaagacaatgggaaaacctatggtaaaaataagattaataggagaagagtaataa 686

                                                    
Query: 606  tcaactttttcccaacaaatttcttttctggtcagggttc 645
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  tcaactttttcccaacaaatttcttttctggtcagggttc 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)