BAC Information

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BAC

Clone NameMSMg01-130I01
Chromosome9 (Build37)
Map Location 57,775,669 - 57,776,259
singlet/doubletsinglet
Overlap geneUbl7
Upstream geneSh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509
Downstream geneSema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I01.T7 (MSMg01no130_i01.b1)MSMg01-130I01.TJ (MSMg01no130_i01.g1)
ACCAG338241AG338242
length710706
length of high quality
(start - end)
591 (47 - 637)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no130_i01.b1 PHD_FILE: MSMg01no130_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:19 2005CHROMAT_FILE: MSMg01no130_i01.g1 PHD_FILE: MSMg01no130_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATAGGTCCAGAATCCGCGGAAT
TCATTATTGCAATGTCTGTGTCTTGCTCAGAGAGTAGCATTTTGTAACTC
TTCGTCCAGAGCTTTCACTTCCACTTCTTCCGAAATGTTCTCTGAAGTTT
AGAAGGGATAGAGTAAGTGTCTTGTTTTAGGGATGCGCACTAAAGCACCA
TGTACAGTCATGAATCTTCATTCATCACCATTCACTGGAAAGACAAGCTT
CTCTGATTGAAGCTGAGAGGAAAGGAACATAGTATCTGTGTATAAACAAA
TATTGAGAAGGCAGTTTAGTGCAGTGCCAATTTTTCTAGACAACATCATT
CAGTCCCCTTCCCCTTAGGGCTTTTGGTCAGATTTGTCATATTTAGATAT
AGAGTCCCTTGTGTAGAGCAGGCCTCAAAGCCAATCATAGAACAGTTATT
TACAGCTGTAATAGCAGTGCCACCATGTGCAAGTGGAGCTTCTTATCTGG
TTTCATGTGGAGGGTTCACAGGTGGGTAAGACCCTTCTCCTTCAGTAGCC
TGCATAGAAACTTGTGAGATTATTAAAAAGCTTCCAGCAGGGGAATCTTC
CAGCTCAGTTCCAGTGTTATTTCTCTGTTTCATGCTACCAAAGTGCTGTC
TTCAGCGATAAGGCTTTATTGTCTAGTTCTGGTGGGCAACCAAGAGGAAT
GGCAAGAACC
ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTCCGAATACCTGCCCTGATTTCCCTGGACGATGTAAGCTGA
AATAAACCCTTTTCTCCCCCCCTGCTTTTGGCCACAATGCTTTTATCACA
GCAGTAGAGACCTAACTAAGACACCCATTCAGCCCCTCTCGGTCACTGCC
AGATGCCATTGGGTGTTCCCTGCCTGGAAAGACCACAGGACCTGATGCAT
CAGTTGCATTTCTCGTTGCTGTGTGAAATCCAGACAAAAGCATCTTCAGG
AAGAAAGGGTTTAACCTGGGTTGTACGGACGGCGAGGGTTCAGTGGACGG
CCACAGGAATTATTCATCACGTCGCATCCCTAGTGAGGAAGCAGAGATGA
GTGATGTCACCCAACTTCCTTTCTCTGATTTATTTACCTAGGACCCCAGC
TTGTGGAATGGGGCCACCTATAGTTAGGGTGATTCTTCCCACCACAATCA
ACCTAATCTAGAAACTGCCTCACAGATGTGACAGAGGTTTGTCTCCTAGG
TAATCCCAGATCCTGTCAAATTGACAAAGTAACCAACACAGGACTAACAC
TGGCTAGGGATTCCTGCAGGAAGACTCTCAGGGATAGGGAGGGTGAAGTG
TGAAGGGGATAGTGACGAGAAGAGGCTACGTGACAGGCCAGGCACGAAGG
AGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i01.b1 MSMg01no130_i01.b1 CHROMAT_FILE:
MSMg01no130_i01.b1 PHD_FILE: MSMg01no130_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:19 2005
         (591 letters)



>mm_chr9_57775469_57776459
          Length = 991

 Score = 1069 bits (553), Expect = 0.0
 Identities = 583/593 (98%), Gaps = 4/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcattattgcaat-gtctgtgtcttgctcagagagtagcattttgtaactcttcgt 59
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcattattgcaatggt-tgtgtcttgctcagagagtagcattttgtaactcttcgt 259

                                                                       
Query: 60  ccagagctttcacttccacttcttccgaaatgttctctgaagtttagaagggatagagta 119
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccagagctttcactttcacttcttccgaaatgttctctgaagtttagaagggatagagta 319

                                                                       
Query: 120 agtgtcttgttttagggatgcgcactaaagcaccatgtacagtcatgaatcttcattcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtgtcttgttttagggatgcgcactaaagcaccatgtacagtcatgaatcttcattcat 379

                                                                       
Query: 180 caccattcactggaaagacaagcttctctgattgaagctgagaggaaaggaacatagtat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caccattcactggaaagacaagcttctctgattgaagctgagaggaaaggaacatagtat 439

                                                                       
Query: 240 ctgtgtataaacaaatattgagaaggcagtttagtgcagtgccaatttttctagacaaca 299
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 ctgtgtataaacaaatatttagaaggcagtttagtacagtgccaatttttctagacaaca 499

                                                                       
Query: 300 tcattcagtccccttccccttagggcttttggtcagatttgtcatatttagatatagagt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcattcagtccccttccccttagggcttttggtcagatttgtcatatttagatatagagt 559

                                                                       
Query: 360 cccttgtgtagagcaggcctcaaagccaatcatagaacagttatttacagctgtaatagc 419
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 cccttgtgtagagcaggcctcaaaggcaatcatagaacagttatttacagctgtaatagc 619

                                                                       
Query: 420 agtgccaccatgtgcaagtggagcttcttatctggtttcatgtggagggttcacaggtgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtgccaccatgtgcaagtggagcttcttatctggtttcatgtggagggttcacaggtgg 679

                                                                       
Query: 480 gtaagacccttctcctt-cagtagcctgcatagaaacttgtgagattattaaaaagcttc 538
           |||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 680 gtaagacccttctc-ttacagtagcctgcatagaaacttgtgggattattaaaaagcttc 738

                                                                
Query: 539 cagcaggggaatcttccagctcagttccagtgttatttctctgtttcatgcta 591
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 739 cagcaggggaatcttccagctcagttccagtgttatttctctgtttcgtgcta 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)