MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-131A16
Chromosome	9 (Build37)
Map Location	70,061,288 - 70,061,672
singlet/doublet	singlet
Overlap gene	Myo1e
Upstream gene	Rora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream gene	Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rora (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19883 MGI:104661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Narg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93697 MGI:2135947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665815 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665815 MGI:3646524
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG244913 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244913 MGI:3645765
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 473 ESTs, 12 Proteins

name	Anxa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12306 MGI:88246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64290 MGI:1927549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bnip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12175 MGI:109327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC624164 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Gtf2a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235459 MGI:1933289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gcnt3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72077 MGI:1919327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6430514L14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76886 MGI:1924136
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo1e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71602 MGI:106621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccnb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12442 MGI:88311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf111 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93836 MGI:1934919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sltm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66660 MGI:1913910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	B230380D07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235461 MGI:2443086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adam10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11487 MGI:109548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cycs-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13064 MGI:109500
definition	note : cytochrome c, pseudogene 1 pseudo : _no_value

name	Lipc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15450 MGI:96216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 5 Proteins

name	LOC100041628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Aqp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64008 MGI:1891066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700020I22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72262 MGI:1919512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041660 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041660
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Rora (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305438 GeneID:19883 MGI:104661
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAR-related orphan receptor alpha transcript_id : NM_013646.1

name	Narg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46195813 GeneID:93697 MGI:2135947
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NMDA receptor-regulated gene 2 transcript_id : NM_145618.3

name	EG244913 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260009 GeneID:244913 MGI:3645765
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 473 ESTs, 12 Proteins product : predicted gene, EG244913 transcript_id : XM_979711.2

name	Anxa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131198 GeneID:12306 MGI:88246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : annexin A2 transcript_id : NM_007585.3

name	Foxb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31340606 GeneID:64290 MGI:1927549
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box B1 transcript_id : NM_022378.2

name	Bnip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803471 GeneID:12175 MGI:109327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BCL2/adenovirus E1B interacting protein 1, NIP2 transcript_id : NM_016787.3

name	Bnip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131127 GeneID:12175 MGI:109327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BCL2/adenovirus E1B interacting protein 1, NIP2 transcript_id : NM_001008238.2

name	LOC624164 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94386203 GeneID:624164
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical LOC624164 transcript_id : XM_888685.2

name	Gtf2a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87299616 GeneID:235459 MGI:1933289
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : general transcription factor II A, 2 transcript_id : NM_001039519.1

name	Gcnt3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430728 GeneID:72077 MGI:1919327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glucosaminyl (N-acetyl) transferase 3, mucin type transcript_id : NM_028087.2

name	6430514L14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130670 GeneID:76886 MGI:1924136
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6430514L14 gene transcript_id : NM_029784.2

name	Myo1e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299823 GeneID:71602 MGI:106621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin IE transcript_id : NM_181072.3

name	Ccnb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86198317 GeneID:12442 MGI:88311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin B2 transcript_id : NM_007630.2

name	Rnf111 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130811 GeneID:93836 MGI:1934919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger 111 transcript_id : NM_033604.2

name	Sltm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62243851 GeneID:66660 MGI:1913910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAFB-like, transcription modulator transcript_id : NM_026337.1

name	Sltm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130289 GeneID:66660 MGI:1913910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SAFB-like, transcription modulator transcript_id : NM_025690.3

name	B230380D07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118403315 GeneID:235461 MGI:2443086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230380D07 gene transcript_id : NM_172772.2

name	Adam10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354069 GeneID:11487 MGI:109548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 10 transcript_id : NM_007399.2

name	Lipc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982277 GeneID:15450 MGI:96216
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipase, hepatic transcript_id : NM_008280.2

name	LOC100041622 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260061 GeneID:100041622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 5 Proteins product : similar to RIKEN cDNA 1110014J01 gene transcript_id : XM_001477924.1

name	LOC100041628 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260063 GeneID:100041628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100041628 transcript_id : XM_001477950.1

name	Aqp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542135 GeneID:64008 MGI:1891066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 9 transcript_id : NM_022026.2

name	1700020I22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260065 GeneID:72262 MGI:1919512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700020I22 gene transcript_id : XM_980183.2

name	LOC100041660 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260066 GeneID:100041660
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100041660 transcript_id : XM_001478002.1

name	Rora (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305439 CCDS:CCDS23314.1 GeneID:19883 MGI:104661
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0046068 - cGMP metabolism [Evidence IMP]; GO:0006809 - nitric oxide biosynthesis [Evidence IMP]; GO:0043030 - regulation of macrophage activation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : RAR-related orphan receptor alpha protein_id : NP_038674.1

name	Narg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34594671 CCDS:CCDS23315.1 GeneID:93697 MGI:2135947
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : NMDA receptor-regulated gene 2 protein_id : NP_663593.2

name	EG244913 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386194 GeneID:244913 MGI:3645765
definition	codon_start : 1 product : hypothetical protein protein_id : XP_984805.1

name	Anxa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6996913 CCDS:CCDS23316.1 GeneID:12306 MGI:88246
definition	GO_component : GO:0030054 - cell junction [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005769 - early endosome [Evidence IDA]; GO:0005624 - membrane fraction [Evidence ISS]; GO:0042383 - sarcolemma [Evidence IDA]; GO:0001725 - stress fiber [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0004859 - phospholipase inhibitor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0042730 - fibrinolysis [Evidence IMP] codon_start : 1 note : calpactin I heavy chain; annexin II; lipocortin II; chromobindin 8; 33-kDa calcimedin; 36-kDa calelectrin; 33-kDa lymphocyte Ca<2+>- binding protein; 33kDa lymphocyte Ca<2+>- binding protein product : annexin A2 protein_id : NP_031611.1

name	Foxb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11693138 GeneID:64290 MGI:1927549
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : mesoderm/mesenchyme forkhead 3; forkhead box B1b; forkhead box B1a product : forkhead box B1 protein_id : NP_071773.1

name	Bnip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980639 CCDS:CCDS23319.1 GeneID:12175 MGI:109327
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0043231 - intracellular membrane-bound organelle [Evidence ISS]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006916 - anti-apoptosis [Evidence ISS]; GO:0006915 - apoptosis [Evidence ISS] [Evidence IEA] codon_start : 1 note : isoform beta is encoded by transcript variant beta; BCL2/adenovirus E1B 19 kDa-interacting protein 2 beta; BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 product : BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 isoform beta protein_id : NP_058067.2

name	Bnip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56606148 CCDS:CCDS23318.1 GeneID:12175 MGI:109327
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0043231 - intracellular membrane-bound organelle [Evidence ISS]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006916 - anti-apoptosis [Evidence ISS]; GO:0006915 - apoptosis [Evidence ISS] [Evidence IEA] codon_start : 1 note : isoform alpha is encoded by transcript variant alpha; BCL2/adenovirus E1B 19 kDa-interacting protein 2 beta; BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 product : BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP2 isoform alpha protein_id : NP_001008239.1

name	LOC624164 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94386204 GeneID:624164
definition	codon_start : 1 product : hypothetical protein protein_id : XP_893778.2

name	Gtf2a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87299617 GeneID:235459 MGI:1933289
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005672 - transcription factor TFIIA complex [Evidence IEA] GO_function : GO:0003702 - RNA polymerase II transcription factor activity [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA] codon_start : 1 note : general transcription factor IIA, 2 (12kD subunit) product : general transcription factor II A, 2 protein_id : NP_001034608.1

name	Gcnt3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430729 GeneID:72077 MGI:1919327
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence IEA] [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006493 - protein amino acid O-linked glycosylation [Evidence ISS] codon_start : 1 note : core 2 beta-1,6-N-acetylglucosaminyltransferase II product : glucosaminyl (N-acetyl) transferase 3, mucin type protein_id : NP_082363.2

name	6430514L14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037475 GeneID:76886 MGI:1924136
definition	codon_start : 1 product : hypothetical protein LOC76886 protein_id : NP_084060.1

name	Myo1e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68299824 GeneID:71602 MGI:106621
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : molecular motor product : myosin IE protein_id : NP_851417.2

name	Ccnb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86198318 CCDS:CCDS23320.1 GeneID:12442 MGI:88311
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 product : cyclin B2 protein_id : NP_031656.2

name	Rnf111 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15809022 CCDS:CCDS23321.1 GeneID:93836 MGI:1934919
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007389 - pattern specification [Evidence IMP] codon_start : 1 product : ring finger 111 protein_id : NP_291082.1

name	Sltm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62243815 CCDS:CCDS23322.1 GeneID:66660 MGI:1913910
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; modulator of estrogen induced transcription product : modulator of estrogen induced transcription isoform a protein_id : NP_079966.2

name	Sltm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62243852 GeneID:66660 MGI:1913910
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; modulator of estrogen induced transcription product : modulator of estrogen induced transcription isoform b protein_id : NP_080613.1

name	B230380D07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118403316 GeneID:235461 MGI:2443086
definition	codon_start : 1 product : hypothetical protein LOC235461 protein_id : NP_766360.2

name	Adam10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680638 CCDS:CCDS23323.1 GeneID:11487 MGI:109548
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0005798 - Golgi-associated vesicle [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0004175 - endopeptidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0019901 - protein kinase binding [Evidence IDA]; GO:0005102 - receptor binding [Evidence ISS]; GO:0042169 - SH2 domain binding [Evidence NAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence ISS]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence ISS]; GO:0007162 - negative regulation of cell adhesion [Evidence ISS]; GO:0007220 - Notch receptor processing [Evidence NAS]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0006913 - nucleocytoplasmic transport [Evidence NAS]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 exception : mismatches in translation note : a disintegrin and metalloprotease domain (ADAM) 10 product : a disintegrin and metalloprotease domain 10 protein_id : NP_031425.1

name	Lipc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982278 CCDS:CCDS23324.1 GeneID:15450 MGI:96216
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016298 - lipase activity [Evidence IDA]; GO:0005319 - lipid transporter activity [Evidence IEA]; GO:0004806 - triacylglycerol lipase activity [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : hepatic lipase product : lipase, hepatic protein_id : NP_032306.2

name	LOC100041622 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260062 GeneID:100041622
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477974.1

name	LOC100041628 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260064 GeneID:100041628
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478000.1

name	Aqp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11528512 CCDS:CCDS23325.1 GeneID:64008 MGI:1891066
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 product : aquaporin 9 protein_id : NP_071309.1

name	1700020I22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386215 GeneID:72262 MGI:1919512
definition	codon_start : 1 product : hypothetical protein LOC72262 protein_id : XP_985277.1

name	LOC100041660 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260067 GeneID:100041660
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478052.1

name	EG665815 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665815
definition	number : 1 pseudo : _no_value

name	Cycs-ps1 (CDS detail)
type	misc_feature
link	vega ensembl
xref
definition	note : cytochrome c pseudogene pseudo : _no_value

clone name	MSMg01-422H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199K05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-425L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510A12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-438D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-131A16.T7 (MSMg01no131_a16.b1)	MSMg01-131A16.TJ (MSMg01no131_a16.g1)
ACC	AG338645	AG338646
length	706	1,057
length of high quality (start - end)	382 (325 - 706)	---
definition	CHROMAT_FILE: MSMg01no131_a16.b1 PHD_FILE: MSMg01no131_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:07 2005	CHROMAT_FILE: MSMg01no131_a16.g1 PHD_FILE: MSMg01no131_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:08 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCG CGGAATTCTAAATTCCATGCCATCATGGATTCCCTTCAGAGCACCCGTCT CCTTGACTGCCATGCTTGCTCCGTGCCCACAGTAGGGTAGATGCTCTGTC CTCAGAGGCAGGAGATAGTGGAGAGGGACCAGATAGAGCTCCCAGTGAGC AAGATGGCAGTCACACGGCCATGAGTATTTTAGGTCAGAAAGGAAATTGT TATTGAAAATGTTTTTTTTTCTTTTGTGGCTCATAAACAACTATTCAAAA GTACTTGGAAGGCTGGCATTATTTTCAGCAGGTAAGGACACTTGCCGCCA AACCTGACAGCCTGAGTTTGGCTTCCAGGACCCACATAGGTGGAAGGAGA GAAGTAATTTCTGAAAGTTGCCTTGCAACCTCTACAGACACGTGTGCACA TACAGAAATAAAGAAATAACTGTAGGGTGTGGATTAAAAAGTAAAACCGA AAAGGCCTTGAATGATGACAGTCTTTTTTTCTCAAGGCAGGAACTCAGAA GTGAATACCAAGTCCATGTCATATACAGAGAAAGGTTCCTGGCTTGTCAA AGTCAGCACCATTATTTTAGGAAAGGACCATAAATTCTGCTTGTCTTGAT TTAACTGTCAAAAAAATATGTAAAAAAAATTCTAATAGGATGACCAATAA GCTATT	TTTTTTTGTTATTAACTNGAACANNGAGGAAGACAANAAATTAATTAAAA AAAGNTGNNGGGATAATTGGATTAGGATGCGGGACTAGGGTCTCNTGGAG AAGGGGAAAGGGAAACATGTGTTTTTGCAAAAGAAGGGAAGGGGGGGGAG GGGGGGGNAAAAAANATAAAAAANAGGGAAAAAGGGGATTTCTCCCGCCA GGGGAAAAAAAAGAAGGGTGTTATAAATAATAANTAAGGGGTAATTAAAG AGATTAAAGAGGAATAGGGGGGTAAAAAAAAAGGAGGAAAAAGGGAAGGA TATATGGAGGGGGGGGAGAAAATGGAGGAAAGAGAGGAAAATAAAAAGGA GGGGGAGAAAGGAGNTTAAAGAGAGGGGGAAAAAAGAAAAAAATAAATTT ATAGAGGTGTAAAAGGNTAGAGAGGAGAAAAAAATAATAATTAAAAAAAG AGGGAAAAAGGGGAAAAGTATAAAAAAAATATATAGAGGAGAGGAGAAGA AGAGGAGGAGTAGGGAAAGAAAAAATAAGGAGGGATATAAAGGAGGGAGA GGTGAGAAGAGAGAGTTTATAAGGGAAAGGGAGGGGGGAGAGTTAATAGA AAAATTTAATTATTTTTATTGGAGAGGAGGAAAAAGGGGGAGGAGGGGGG AGGAAGAAGNAGGTGAAAAGGGAAGAGGGGATGTGTATATATGTAACGGG GAAGAAAAAATAAGAGGAGGGGATGGAGGGAGTGGTATTTTGAAGATATT AAGAAGAATTGGTGTAATGGGAGGGGGGGAGGGGGGTGGAGGAGGGGAAG AGAGACGTGTAGGTATGAGTGTGGGGAGGATAGAAAAGGTATTAATTTAA GTATTGAGGTTGTTGTACTAAGGAACACGTGTTGGGGGGGGGGGGTGGGG ATGGTGAAGTGTATAAGTGGGTGATGTAATTATGATGTAGGGTAGGAGTG GGGAGTGAATAGGTAGNAGGGAGATAATATATTGTGAGTTAGATGTTGTA TTTTTATTGAATGAAGAAGATAGTATAGAATGGAGGGAGGTTTGGTAACA GAGAGAG
quality values	Open. Hide. 0 3 7 7 8 8 10 8 9 17 30 30 28 20 16 16 12 12 19 32 33 33 33 33 33 33 33 33 25 23 18 10 9 9 7 6 6 6 7 7 15 16 11 15 10 10 9 9 12 21 26 33 33 33 33 50 42 41 25 21 10 10 9 7 7 6 6 6 8 10 12 13 19 16 28 28 28 37 37 57 57 57 57 57 42 37 37 37 37 37 50 53 53 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 68 68 68 68 68 43 35 27 20 20 32 32 48 50 50 50 50 50 50 68 68 68 68 68 51 48 48 48 48 48 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 50 48 50 57 57 57 68 51 51 50 51 50 50 68 68 68 68 68 68 68 68 68 68 68 54 54 54 54 54 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 27 23 12 11 11 6 8 8 8 8 8 16 23 19 34 41 59 59 59 59 59 59 57 57 57 57 57 57 57 57 59 59 59 53 53 57 57 57 53 68 57 57 57 48 43 37 32 30 30 42 44 47 42 32 30 24 21 12 12 12 24 24 42 42 48 48 57 57 57 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 50 50 43 43 43 57 57 57 68 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 59 59 57 57 59 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 59 59 57 57 59 59 68 68 68 59 59 57 57 52 52 57 57 57 57 57 59 57 57 57 57 57 52 57 57 57 57 57 57 57 57 57 68 57 57 59 68 68 57 57 57 57 57 57 57 57 59 59 57 59 57 57 47 47 47 57 57 57 57 57 57 57 57 48 57 57 59 59 59 59 59 59 48 48 48 48 54 57 57 57 59 59 48 54 54 54 57 48 57 48 48 54 59 59 57 54 54 59 59 59 59 57 57 57 57 57 57 59 57 59 59 59 59 59 59 48 48 43 43 41 39 39 39 39 39 39 34 34 39 37 37 39 39 30 30 30 32 27 39 43 39 39 39 40 39 41 36 36 36 43 39 41 44 37 37 37 31 31 37 41 37 37 32 31 25 31 39 39 39 39 35 31 35 39 39 41 46 43 37 22 23 12 12	Open. Hide. 21 21 21 21 19 9 7 6 6 6 6 6 6 6 6 6 3 0 3 8 7 7 3 0 0 3 12 10 8 8 8 8 8 6 6 3 0 3 10 7 8 8 8 8 8 10 11 16 10 9 12 8 8 3 0 3 3 0 0 3 11 9 9 7 7 6 6 6 7 7 6 7 7 10 8 6 6 8 6 6 6 17 8 6 6 3 6 6 12 9 12 10 9 3 0 3 9 9 9 9 9 9 8 10 8 10 8 12 8 8 8 8 8 8 8 7 7 8 6 6 6 6 7 7 7 6 6 6 6 6 10 6 6 6 6 6 6 6 9 12 12 18 20 19 20 15 16 11 11 9 11 15 15 13 11 11 3 0 3 17 19 19 13 3 0 3 6 6 6 10 6 6 3 0 3 10 11 17 18 11 12 12 10 10 10 10 9 9 9 12 6 6 6 8 8 8 8 8 8 8 8 6 6 6 6 7 8 18 22 15 11 9 9 8 8 8 8 8 10 8 8 6 6 6 11 15 8 8 8 8 8 8 3 0 3 9 9 9 9 9 9 7 8 8 6 6 6 11 7 6 6 6 6 6 6 7 8 8 10 9 9 8 13 6 6 6 8 12 16 12 11 11 19 24 24 24 24 24 21 21 14 8 8 8 7 7 9 11 12 18 23 11 9 9 9 11 9 9 9 9 9 10 16 15 8 8 8 8 8 13 13 18 16 20 8 8 6 7 6 15 13 6 6 8 6 6 7 7 11 8 12 7 9 9 9 9 9 20 16 19 12 12 13 12 12 18 13 10 10 10 11 11 11 18 13 10 10 15 21 10 12 8 8 3 0 3 6 6 6 6 7 9 6 6 6 7 8 10 13 13 21 14 11 11 10 11 18 21 37 39 21 17 7 7 6 11 13 9 9 8 8 8 8 7 8 6 6 6 6 6 6 8 11 8 8 3 0 3 9 14 17 8 6 6 8 19 19 21 21 10 15 12 19 8 9 9 12 9 9 9 17 10 12 16 11 11 10 8 8 8 8 8 8 8 10 8 10 10 8 10 10 10 11 10 19 15 8 8 8 8 8 8 10 9 9 9 15 12 6 8 6 6 8 8 8 8 6 9 9 8 11 6 8 15 13 9 6 8 6 7 10 9 9 9 11 14 10 10 8 8 8 8 10 10 10 13 8 6 6 6 7 9 8 10 9 11 11 13 13 11 11 11 12 12 9 6 6 6 6 10 8 7 7 8 10 10 10 11 9 8 8 8 6 6 8 8 10 10 9 9 10 8 15 8 9 15 15 17 13 9 10 11 11 11 8 8 11 8 8 8 11 10 8 8 9 8 10 8 8 8 8 9 9 8 8 7 7 11 13 10 9 9 9 8 7 13 8 8 6 9 6 6 8 22 28 13 10 8 8 8 6 8 6 8 9 7 10 8 7 8 6 10 10 12 12 17 15 15 30 14 13 8 15 9 9 15 9 9 10 10 8 8 8 8 10 9 8 8 3 0 3 6 8 8 10 12 16 12 10 10 10 8 8 8 10 8 9 8 13 9 8 8 8 12 12 7 6 7 8 8 8 10 7 6 8 6 6 6 8 8 6 6 6 6 8 8 8 8 11 10 11 10 15 11 14 15 15 9 9 13 15 8 6 6 6 10 8 9 13 12 9 12 9 7 7 8 10 8 8 8 8 9 9 9 9 9 10 10 9 6 6 9 7 10 10 7 7 6 6 8 8 8 8 10 10 10 10 10 8 9 8 8 8 8 8 8 8 17 19 18 11 11 29 14 9 9 9 9 14 9 9 9 6 6 8 8 6 6 7 8 10 10 13 8 6 6 6 8 6 6 8 8 8 8 8 6 8 6 7 10 12 11 10 10 10 8 8 8 8 9 10 10 6 6 8 8 8 11 7 6 8 6 8 9 9 9 9 10 11 10 8 8 8 8 8 9 8 6 6 6 6 6 11 11 8 7 7 8 9 9 8 8 6 7 6 6 8 8 8 8 8 11 13 10 9 9 9 11 11 11 16 21 25 9 8 8 8 8 8 10 8 8 8 8 6 6 6 6 8 6 8 6 6 8 8 9 9 11 9 11 11 11 15 9 6 6 7 7 9 9 10 10 8 8 8 8 8 8 8 8 8 8 9 9 9 9 11 9 15 9 9 13 8 8 8 8 8 8 9 9 11 11 10 10 8 3 0 3 7 9 8 7 8 8 6 6 8 6 6 6 6 6 8 8 15 10 10 8 13 6 6 6 6 6 8 8 9 6 8 6 6 8 8 10 9 8 7 8 9 9 7 7 8 8 8 10 9 9 10 11 15 10 9 9 8 8 8 16 10 11 8 8 7 7 8 8 10 8 8 8 8 8 6 6 6 6 8 6 7 8 12 12 9 9 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no131_a16.b1 MSMg01no131_a16.b1 CHROMAT_FILE:
MSMg01no131_a16.b1 PHD_FILE: MSMg01no131_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:07 2005
         (382 letters)



>mm_chr9_70060958_70061741
          Length = 784

 Score =  710 bits (367), Expect = 0.0
 Identities = 380/385 (98%), Gaps = 3/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaggtaaggacacttgccgccaaacctgacagcctgagtttggcttccaggaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 715 tcagcaggtaaggacacttgccgccaaacctgacagcctgagtttggtttccaggaccca 656

                                                                       
Query: 61  cataggtggaaggagagaagtaatttctg-aaagttgccttgcaacctctacagacacgt 119
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 655 tataggtggaaggagagaagtaatttctgaaaagttgccttgcaacctctacagacacgt 596

                                                                       
Query: 120 gtgcacatacagaaataaagaaataactgtagggtgtggattaaaaagtaaaaccgaaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtgcacatacagaaataaagaaataactgtagggtgtggattaaaaagtaaaaccgaaaa 536

                                                                       
Query: 180 ggccttgaatgatgacagtctttttttctcaaggcaggaactcagaagtgaataccaagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggccttgaatgatgacagtctttttttctcaaggcaggaactcagaagtgaataccaagt 476

                                                                       
Query: 240 ccatgtcatatacagagaaaggttcctggcttgtcaaagtcagcaccattattttaggaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccatgtcatatacagagaaaggttcctggcttgtcaaagtcagcaccattattttaggaa 416

                                                                       
Query: 300 aggaccataaattctgcttgtcttgatttaactgtcaaaaaaatatgt--aaaaaaaatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 415 aggaccataaattctgcttgtcttgatttaactgtcaaaaaaatatgtaaaaaaaaaatt 356

                                    
Query: 358 ctaataggatgaccaataagctatt 382
           |||||||||||||||||||||||||
Sbjct: 355 ctaataggatgaccaataagctatt 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 784
Length adjustment: 9
Effective length of query: 373
Effective length of database: 775
Effective search space:   289075
Effective search space used:   289075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information