BAC Information

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BAC

Clone NameMSMg01-131F20
Chromosome9 (Build37)
Map Location 109,940,016 - 109,940,582
singlet/doubletsinglet
Overlap geneMtap4
Upstream geneScotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, LOC100049540
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131F20.T7 (MSMg01no131_f20.b1)MSMg01-131F20.TJ (MSMg01no131_f20.g1)
ACCAG338888AG338889
length715742
length of high quality
(start - end)
---567 (70 - 636)
definitionCHROMAT_FILE: MSMg01no131_f20.b1 PHD_FILE: MSMg01no131_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:33 2005CHROMAT_FILE: MSMg01no131_f20.g1 PHD_FILE: MSMg01no131_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCTCAAAATTGCGGCGCAAACGACGCCATTCTGGACNGCCGNGGAANC
NNAATTTCTNCACGCGGGGCANCNNANGCCGGCNGNGAACCGNCCAGGAA
GAAGAAGCCCCACACAGCCCCAGCACAAACACAAAAGGAGAAGAGAAGGC
ACCCACAAAACAGAGAGCAGGCAGAACAGCAGCACAAAACAGGAAAAGCG
CAGCCACCACACCAAAAAGCACAAAAAAACAAGCTTTGTTTACTTGTGAG
ATGGAACATACACTCTTATTGAATTACCATCCATGACAGAAAGGGCTACT
TTTTTTTTTTGACAAGAAGACGGGACCAAACAAAGAGCAACCTGCTTACC
CCCCCCACCCAACGGCTAGACAAGAAAAGACAAAAAGGAACAAACCCCCC
AGAGCAAGAAAAAAACAGCACGCAACAGCTGAGAGAAGGACCACCGACAC
TGACAACTCACTTCTAGGAGAAAACAGATCTCCAGTTCTGTCAACTCCCT
TTCAGCACTATCACCTTTACTCTAAAGAAATAAAGACATATATTATATAC
TTGTGTCACAAAAGAATTGCTAATGAAGGCTCAAGATGAACTTCTTTAAA
TCTCAAAGAACTTATATGATTTCCCCCAAAAAATAAACACTACAAGATTT
TTTTCTTCTACACAAAGCCCGCGCGTGCATAAAATATCCTGAACACCTAA
AAATCACACACTAAC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTACCCCAGAGAGGTCATGGCAGGGAAGCCA
GGGATATAGAGAGCATGCCAATGATGATGAAGAAAAAGAAGAAGAAACCA
AAGCAAAAAAGATATCCTCAGTCCCGAGCTGGGGGACCTTGGGATGACGA
TAATGCAGAAGAGCGCCATGTTGCTCATGGGCCCCTGAAGTCAGGCGTGG
GCCCTAGCCAGCCTACTGCGGTGGGCACAGAATGTGGATTTGTGTCCAGA
GCAGTCTGGAAGCGTGACTGTGCTTATAGTCCTGGGGTTACTTCATGTCC
AGAACAGCCTCCCGAAATCATGGTAAAAGCTCAGCTCAAGCAGAGAGTAG
AAGATGACCACAGAGATAAAAGCCTGCTATCAGGGAACCAAGATAAGAAC
TTGCTGCAGCAAGAGGAAGAGAGAGCCCCAGCTACATCACACCTGAAGTC
TTCAGTGGGTACAGGCAGGGCAGTGAGTTCATCGAGTCTGAAAGTAACCC
CAGGTGACAGCACTGCACACAAAGTGACAGCTCTGCAAGGCGGCTGTTCC
CCTTTATTGGCCCAAGATATTATGAATAAAGTTCCAAAACCCACAACAGA
GGAAGTGCTGCCAAGTCTGACCTCAGCAGAACATCCGTTAGAAGACGGTC
TGAAGGCATAGAGTGTTGTAAGTAGAGCAGCTGCACTACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_f20.g1 MSMg01no131_f20.g1 CHROMAT_FILE:
MSMg01no131_f20.g1 PHD_FILE: MSMg01no131_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:33 2005
         (567 letters)



>mm_chr9_109939816_109940782
          Length = 967

 Score = 1027 bits (531), Expect = 0.0
 Identities = 558/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaccccagagaggtcatggcagggaagccagggatatagagagcatgccaatgatgatg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctaccccagagaggtcatggcagggaagccagggatatggagagcatgccaatgatgatg 260

                                                                       
Query: 61  aagaaaaagaagaagaaaccaaagcaaaaaagatatcctcagtcccgagctgggggacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaaagaagaagaaaccaaagcaaaaaagatatcctcagtcccgagctgggggacct 320

                                                                       
Query: 121 tgggatgacgataatgcagaagagcgccatgttgctcatgggcccctgaagtcaggcgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggatgacgataatgcagaagagcgccatgttgctcatgggcccctgaagtcaggcgtg 380

                                                                       
Query: 181 ggccctagccagcctactgcggtgggcacagaatgtggatttgtgtccagagcagtctgg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccctagccagcctactacggtgggcacagaatgtggatttgtgtccagagcagtctgg 440

                                                                       
Query: 241 aagcgtgactgtgcttatagtcctggggttacttcatgtccagaacagcctcccgaaatc 300
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcgtgactgtgcagagagtcctggggttacttcatgtccagaacagcctcccgaaatc 500

                                                                       
Query: 301 atggtaaaagctcagctcaagcagagagtagaagatgaccacagagataaaagcctgcta 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggtaaaagctcagctcaagcagagagtagaagatgaccacagagataaaagcctgcta 560

                                                                       
Query: 361 tcagggaaccaagataagaacttgctgcagcaagaggaagagagagccccagctacatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagggaaccaagataagaacttgctgcagcaagaggaagagagagccccagctacatca 620

                                                                       
Query: 421 cacctgaagtcttcagtgggtacaggcagggcagtgagttcatcgagtctgaaagtaacc 480
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 621 cacctgaagtcttcagtgggtacaggcagggcagtgagtccatcgagtttgaaaggaacc 680

                                                                       
Query: 481 ccaggtgacagcactgcacacaaagtgacagctctgcaaggcggctgttcccctttattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaggtgacagcactgcacacaaagtgacagctctgcaaggcggctgttcccctttattg 740

                                      
Query: 541 gcccaagatattatgaataaagttcca 567
           |||||||||||||||||||||||||||
Sbjct: 741 gcccaagatattatgaataaagttcca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)