BAC Information

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BAC

Clone NameMSMg01-131F22
Chromosome9 (Build37)
Map Location 16,633,790 - 16,634,271
singlet/doubletsinglet
Overlap genenone
Upstream geneMtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131F22.T7 (MSMg01no131_f22.b1)MSMg01-131F22.TJ (MSMg01no131_f22.g1)
ACCAG338891AG338892
length714747
length of high quality
(start - end)
574 (73 - 646)463 (69 - 531)
definitionCHROMAT_FILE: MSMg01no131_f22.b1 PHD_FILE: MSMg01no131_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:34 2005CHROMAT_FILE: MSMg01no131_f22.g1 PHD_FILE: MSMg01no131_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAATCATAATTTGCGGCGCTAAACGACTCCTATTCAGAGGAGAGCG
CGGAATTCCTGATTTTCTAAGACTTTTATCACGAATGGGTGTTGAACTTT
GTCAAATGCCTTCTCAGCACCTAATGAAATGATCATGTGTTTGTTTGTTT
GTTTTTCCTTTGAGTTTGATTATATACTGGATTACATTGATGGATTTCCA
CATATTGAACCATCCCTGCATCTCTGGGATAAAGTCTACTTGATCCTGGA
GAATGATCGTTTTGATGTGTTCTTGGATTCATTTTGCAAGAATTTTATTG
AGTACTTTTACATCTATATCATTTATAAAGTTGGTCTGAAGTTCTTTTTC
GTTGTTGGGCCTTTGTATGCTATAGGTGTAAGTGTAATTGTGACTTCATA
GAACAAATTGGGTAGTGTTCCTCCTGTTTCTATTTCGTTGATTAGTTTGA
AGAGCATTTGTATTAGGTCTTCTTATAAAGTCTGATAGAATTCTGCACTA
AACTTATCTGTTCCTGGATGTCTTTTGGTTGGGAGACTTTTAATGACTGC
TTTTATTTCTTTAGGTATTATGGGACTGTTTTGATGATTTATCTGGTATC
TTGATTTAACTTTGCGACTTGATGTCTGTCTAGAAAATTGTCCTTTTCAT
CCAGATTTTTCAGTTGTGTTGAGTATAAGCTTTTATAGTAGGATCTGATG
ATTTTAGGGATTTC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCGAATTCTTTGTTTAGCTCTGTGCCCATTTTTTAAT
GGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATAT
TGGATGTTAGTCCTCTATTTGATTTAGGATTGGTAAAGATTCTTTCCCAA
ACTGTTGGTGGCATTTTTGTCTTATTGGCAGTGTCTTTGAGGCAATAGAT
TCTTAATAGTCTGTGTTAAAACCAAGGTAATAAACTGAGACACTGGAGAT
CTCATAATTAGGATATAGGGGAGGAGTATCACAGACATGAAAACATAGAG
AACTTCAGTCAGATGAGTGATGAAAATCTTTGGAGAAAGGCTAGCATCTT
GCCTTGTTTTATGTTTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTC
TCTCTGTGAGTATGATATTGCTTGTATTCATATTATATGTGTGTTTGTAT
GTATGTATATATGTGGTGTGTGTGTGTGTNNNNNNCNTCTTTTTTCTTTT
TTTTTTTTTTTTTCCCTTCTCCTCTTTTCCCTCTTTTTTTTCCCTTTCTT
TCTTCCTCCCCTTCCTCTTTTTCCTTTCTTCCCTTTCTTTTCTCTCTTTT
TCTTTTCTCTTTCTCTTCCTCTTTTCTTCTTTTCTCCCCCTCTCCTTTTC
TCCTTTCTTTTTCTTTTCCTTTTCCTTTTCCCTTTCCCCCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_f22.g1 MSMg01no131_f22.g1 CHROMAT_FILE:
MSMg01no131_f22.g1 PHD_FILE: MSMg01no131_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:34 2005
         (463 letters)



>mm_chr9_16633590_16634450
          Length = 861

 Score =  801 bits (414), Expect = 0.0
 Identities = 456/484 (94%), Gaps = 25/484 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttgtttagctctgtgcccattttttaatggggttatttgattttctggagtccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttgtttagctctgtgcccattttttaatggggttatttgattttctggagtccacc 260

                                                                       
Query: 61  ttcttgagttctttatatatattggatgttagtcctctatttgatttaggattggtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgagttctttatatatattggatgttagtcctctatttgatttaggattggtaaag 320

                                                                       
Query: 121 attctttcccaaactgttggtggcatttttgtcttattggcagtgtctttgaggcaatag 180
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 321 attctttcccaaactgttggtggcgtttttgttttattggcagtgtctttgaggcaatag 380

                                                                       
Query: 181 attcttaatagtctgtgttaaaaccaaggtaataaactgagacactggagatctcataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcttaatagtctgtgttaaaaccaaggtaataaactgagacactggagatctcataat 440

                                                                       
Query: 241 taggatataggggaggagtatcacagacatgaaaacatagagaacttcagtcagatgagt 300
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggatataggggaggag-a-cacagacatgaaaacatagagaacttcagtcagatgagt 498

                                                                       
Query: 301 gatgaaaatctttggagaaaggctagcatcttgccttgttttatgtttctctctctctc- 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 499 gatgaaaatctttggagaaaggctagcatcttgccttgttttatgtttctctctctctcc 558

                                                                       
Query: 360 ----tcctctctctctctctctctctctctct------------------gtgagtatga 397
               ||||||||||||||||||||||||||||                  ||||||||||
Sbjct: 559 tctctcctctctctctctctctctctctctctctctctctctctctctctgtgagtatga 618

                                                                       
Query: 398 tattgcttgtattcatattatatgtgtgtttgtatgtatgtatatatgtggtgtgtgtgt 457
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 tattgcttgtattcatattatatgtgtgtttgtatatatgtatatatgtggtgtgtgtgt 678

               
Query: 458 gtgt 461
           ||||
Sbjct: 679 gtgt 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 861
Length adjustment: 10
Effective length of query: 453
Effective length of database: 851
Effective search space:   385503
Effective search space used:   385503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)