BAC Information

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BAC

Clone NameMSMg01-132L24
Chromosome9 (Build37)
Map Location 19,640,863 - 19,641,426
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859
Downstream geneOlfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132L24.T7 (MSMg01no132_l24.b1)MSMg01-132L24.TJ (MSMg01no132_l24.g1)
ACCAG339906AG339907
length681684
length of high quality
(start - end)
555 (127 - 681)531 (80 - 610)
definitionCHROMAT_FILE: MSMg01no132_l24.b1 PHD_FILE: MSMg01no132_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:21 2005CHROMAT_FILE: MSMg01no132_l24.g1 PHD_FILE: MSMg01no132_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACATCAAAATTTGCGGCGCTAAACGACTCCTATTTTCAGAAAGGCGCGGA
ATTCTATGGCTTTCCCAAAGATAGCTCTTAAACCATTGTGATGTTAGTCA
TGAATGTGTAAACTTTATTAACCCACTACAAGTTATTTGATATTTCCAAC
ACACAGAGAAACAAAGGAAATATATACTGAAATTGGTTTTCTTTGCTTAG
TTAACAGCTCACATATTCTAAAAATCCAAGCTTAACATTTTTCTTAGAAC
ATGTCCTTGAAATAGACAATGATAGATGATGTGACTTATGTAAGAATGAT
GAAATAACAATTTTTAGAGTGGCATCATTAGGGTACTAGAGAAATTATGT
CATAAAACTTATATATTCATATCATTTAATTTATAGTTGTTGTTCTTACT
GCTGTGACAAAGCTAAGGAAAGGAGAGTTAATTTGACTCAATATTTGAAA
GTACAGTGTTTCATAGTGAGCATGTCATGGTATGCCAAGGGCAAAAGGCA
GATTCTCACATTATGTTTCCAGTTTAGAATACGAGAAAGATGACTGCTGA
AGGTAGACACCATGCTCTTTATTCTGTCTTCCTATCTTGTGGAATAGGGT
ACTCACATTCATTGTGGACCTTCCCAAAACAATTGGCCCAAACTAGAAAA
ATATCTCCCAGTCAGATACAGAGAGTATACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCAGAAATTCAGAAATGATACAATCTCAGACAAGACAA
AATCCATCATGGAATGGTGAGCAGGAGGAATGAAATCTCATCTCACCAAT
AGCAGCTGTTAGTATTCATTGCTGTGGAGAGGGAGTGTCAAGGATCAAGT
TCCATTTGTGTATTTTAATAGCACGAGTTGCTGACAATTTAAGAATTAGG
TGGCTGTATATACATGCATGAGTCCTCAATTTTATTACATTAAAAATGAC
TTTGATTTTTTTCATGAGTATCATCCTGTTTTTATTACTTTAGACCTTTA
ATTTAAGTTGGAATCTAGGATAGTGATACTACCAGCAGTTTTTTGTTTGT
TTGTTTTTGTTTGATTTGTTTTTGGTTTTTTTAAGGGGTTATTTTTTTTT
TTTTACTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAATGCTATC
CCAAAAGTCCCCCACACTCTCCCCCCTACTCCCCTACCCAGGCACTCCCA
CTTCTTGGTCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGGAAGA
CCAATGAGCCTCTCTTTCCAATGATGACAGACTAGGCCATCTTCTGATAC
ATATGCAGCTAGAGACAGGAGCTCATGCGGGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_l24.g1 MSMg01no132_l24.g1 CHROMAT_FILE:
MSMg01no132_l24.g1 PHD_FILE: MSMg01no132_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:21 2005
         (531 letters)



>mm_chr9_19640663_19641593
          Length = 931

 Score =  679 bits (351), Expect = 0.0
 Identities = 496/569 (87%), Gaps = 48/569 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaatctcagacaagacaaaatccatcatggaatggtgagcagg-aggaatgaaatct 59
           |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 201 atacaagctcagacaagacaaaatccatcatggaatggtgag-aggtaggaatgaaatct 259

                                                                       
Query: 60  catctcaccaatagcagctgttagtattcattgctgtggagagggagtgtcaaggatcaa 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 catctcaccaatagcagctgttagcattcattgctgtggagagggagtgtcaaggatcaa 319

                                                                       
Query: 120 gttccatttgtgtattttaatagcacgagttgctgacaatttaagaattaggtggctgta 179
           ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 320 gttccatttgtgtattttaatagcatgagttgctgacaattcaagaattaggtggctgta 379

                                                                       
Query: 180 tatacatgcatgagtcctcaattttattacattaaaaatgactttgatttttttcatgag 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 380 tatacatgcatgagtcctcaattttattacattaaaaatgactttgactttct-catgag 438

                                                                       
Query: 240 tatcatcctgtttttattactttagacctttaatttaagttggaatctaggatagtgata 299
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatcattctgtttttattaatttagacctttaatttaagttggaatctaggatagtgata 498

                                                                       
Query: 300 ctaccagcagttttttgtttg-tttg-ttt---ttg-tttgatttgtttttggtttt--- 350
           |||||||||||||||| |||| |||| |||   ||| ||||||||||||| ||||||   
Sbjct: 499 ctaccagcagttttttctttggtttggtttagtttgctttgatttgttttcggttttgtt 558

                                                                       
Query: 351 --------------------------------tttaaggggttatttttttttttttact 378
                                           ||| ||| |||||| ||||||||| |||
Sbjct: 559 gttgttgttgctgttgttgttgttgttgttgtttttaggagttattctttttttttcact 618

                                                                       
Query: 379 tttttaa-ttaggtattttcttcatttacatttccaatgctatcccaaaagtcccccaca 437
           ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct: 619 tttttaaattacgtattttcttcatttacatttccgatgctatcccaaaagtcccc-acc 677

                                                                       
Query: 438 ctctcccccctactcccctacccaggcactcccacttcttggtcctggcgttcccctgta 497
           | | |||||  | |||||||||||  ||||||||||||||  ||||||||||||||||||
Sbjct: 678 cccaccccc--aatcccctacccacccactcccacttcttattcctggcgttcccctgta 735

                                        
Query: 498 ctgaggcatataaagtttggaagaccaat 526
           ||||||||||||||||||| |||||||||
Sbjct: 736 ctgaggcatataaagtttgcaagaccaat 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)