Query= MSMg01no132_m17.b1 MSMg01no132_m17.b1 CHROMAT_FILE:
MSMg01no132_m17.b1 PHD_FILE: MSMg01no132_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:25 2005
(629 letters)
>mm_chr9_52131950_52132981
Length = 1032
Score = 998 bits (516), Expect = 0.0
Identities = 578/600 (96%), Gaps = 5/600 (0%)
Strand = Plus / Minus
Query: 2 gtatgtaagtatgtaacattttatcatgatatctagaacactaaggcaagtttccctacc 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 599 gtatgtaagtatgtaacattttatcatgatatctagaacactaaggcaagtttcccta-c 541
Query: 62 ccatccaccccctatctatccaccccacctaccaagacaaccccaccttggcccaccctc 121
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 540 ccatccaccccctatctatccaccccacctaccaagtccaccccaccttggcccaccctc 481
Query: 122 ccttacactgccccttccctccccctacccccacccaggtctcttaatttaggcagagaa 181
|||||||||||||| |||||||||| |||||| ||||||||| |||| ||||||||||||
Sbjct: 480 ccttacactgccccctccctccccccacccccgcccaggtcttttaacttaggcagagaa 421
Query: 182 tgcagatacatgactcctctcttagtccactgcaattt-tggctaaagcatgccaccctt 240
|||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct: 420 tgcaaatacatgactcctctctcagtccactgcaatttgtggctaaagcctgccaccctt 361
Query: 241 aaagagaccattgccaagctggaatagactttctttct---caagttacatgaggagaaa 297
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 360 aaagggaccattgccaagctggaatagactttctttctcaacaagttacttgaggagaaa 301
Query: 298 gaaatttgcatattcatttaaatgaagaagtcaattcaaaggggaaaaaaacagtattat 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 300 gaaatttgcatattcatttaaatgaagaagtcaattcacaggggaaaaaaacagtattat 241
Query: 358 atgtgaaagaaatctcactgccttaataaacattagtgtgggctggagagatggctcaga 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgtgaaggaaatctcactgccttaataaacattagtgtgggctggagagatggctcaga 181
Query: 418 ggttaagagcattggctgctcttcttagaggtcctgagttcaatctccagctaccacatg 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 180 ggttaagagcattggctgctcttcttagaggtcctgagttcaacctccagctaccacatg 121
Query: 478 gtggctcacaaccatctatactgggatctgatgccctcttctggcaaccagattcacatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtggctcacaaccatctatactgggatctgatgccctcttctggcaaccagattcacatg 61
Query: 538 caggcagaacactctatacataataaataaattttaaaaataaaaagagaaaacccagta 597
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 60 caggcagaacactgtatacataataaatacattttaaaaataaaaagagaaaacccagta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1032
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1022
Effective search space: 632618
Effective search space used: 632618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_m17.g1 MSMg01no132_m17.g1 CHROMAT_FILE:
MSMg01no132_m17.g1 PHD_FILE: MSMg01no132_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:25 2005
(636 letters)
>mm_chr9_52003299_52004338
Length = 1040
Score = 1195 bits (618), Expect = 0.0
Identities = 633/640 (98%), Gaps = 4/640 (0%)
Strand = Plus / Plus
Query: 1 tagccactatgcctcaagatctccatgccaaaatcaaggtcagaaacttgtatctcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagccactatgcctcaagatctccatgccaaaatcaaggtcagaaacttgtatctcccag 260
Query: 61 cctccagattaggatcactggtgagccttcaattctggattgtagttcattccagatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccagattaggatcactggtgagccttcaattctggattgtagttcattccagatata 320
Query: 121 gtcaatttgacaaccaggaatagccactacactaggtatgccattatggtcaggtggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaatttgacaaccaggaatagccactacactaggtatgccattatggtcaggtggggg 380
Query: 181 aaacacaagtatgccacatgttcaagacaaggaatgaatgtggaggagtgggagaggaga 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aaacacaagtatgccacatgttcaagacaaggaatgaatgtggaggggtgggagaggaga 440
Query: 241 ctggaaagggtgttaggaacacaaggagacactaccacatttaccaataccgttagcaat 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaaagggtgttaggaacacaaggggacactaccacatttaccaataccgttagcaat 500
Query: 301 gttggtggccataggagccgtaaagaaatttaagcaaggtagagatagtataagaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttggtggccataggagccgtaaagaaatttaagcaaggtagagatagtataagaatttt 560
Query: 361 atctgaagagccgttgagcttcaacttttagaacagat----tagaaagagatgtggctg 416
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 atctgaagagccgttgagcttcaacttttagaacagatagattagaaagagatgtggctg 620
Query: 417 gaagctttccaactttcctaggcaggttattaggtgccagggggctagagtggggaaagt 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaactttccaactttcctaggcaggttattaggtgccagggggctagagtggggaaagt 680
Query: 477 agaagtacccctcactcaatgactattctcatggtattgaaagaagacggccagagctgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaagtacccctcactcaatgactattctcatggtattgaaagaagacggccagagctgt 740
Query: 537 gtgccggagagatgtggggtggcaagagtgatggtttaaagggaactgtcaaaagtgaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgccggagagatgtggggtggcaagagtgatggtttaaagggaactgtcaaaagtgaag 800
Query: 597 tgaaattgatgggagccaagtgacagcctggaaagcctga 636
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaaattgatgggagccaagtgacagcctggaaagcctga 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1040
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1030
Effective search space: 644780
Effective search space used: 644780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
