BAC Information

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BAC

Clone NameMSMg01-132P21
Chromosome9 (Build37)
Map Location 38,662,126 - 38,662,412
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924
Downstream geneOlfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132P21.T7 (MSMg01no132_p21.b1)MSMg01-132P21.TJ (MSMg01no132_p21.g1)
ACCAG340085AG340086
length712706
length of high quality
(start - end)		669 (44 - 712)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no132_p21.b1 PHD_FILE: MSMg01no132_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:41 2005CHROMAT_FILE: MSMg01no132_p21.g1 PHD_FILE: MSMg01no132_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAAT
TCCACTGCGTTGTCATCTCAAATGGCCAAGAAGCACTTACAGAAGTGTTC
AAAGTCCTTAGTCATCATGAAAGTGAAAATTAAAACAACCCTCACATTCC
ACCTTACACCAATAACAATGGATAAGATCAAACGTGTAGGTGACACCACA
TACTGGCTAGGATATGGAGAAACAGCCACAATCCTCCATTGCTGGTGGGA
GTACAAACTGGTATAACCATTCTTGTAATAAATGTGGTGGCTCCTCAAAA
AATTGGAAATAGTTCTACCAGAAGACCCAGCTATTCCATTCTTGGGCATA
AACCCAAAAGATGCCTCACCATAGACAAATGTTCCACAATGTTCACGGCA
TCCTTATTTGTTATAACCAGAAGCTAAAAACAACCCATATGTTTTTTCAA
ATGAAGACTGGATACAGGAAATGGGGCTTACTTACACAATGAAATACTAT
TCAGCCATTAAGAACGAGAACATCATGAATTTTGCAGGCAAATGGATGGA
ACTATAAAGTATATCATCCTGAGTGAGGTACTCCAGACCCAAAGGGACAT
ACATGGTACGTACTAACAAGTGAATGATTAGCCAAAAAGTACAAAATACC
TAGGATACAAACCATGGAATTTAAGAAGTTTAATAATCAGAAGCCCCAAT
TGAGGATGTTTC

TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCAGAAATTCTGATCACAGATAAAATGCTTTCTTACTCATT
AAAAAAGAGTTACCTCATGCCTCTAGAAGCAAAATAGAAATTTTGCTCTA
AGGAGGCAGTTTCTTTTTCCCTATGGAGGAAATTTTATTGGTATGGTTTT
GTTTTTGTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGACCTGGCTG
TCCTGGAACTCACTCTGTGGACCAGGTTGGCATGGAACTAAGAAATCTGC
CTGCCTCTGCCTGCCAAGTGTTTCGATTAAAGGCACGTGCCACCACTGCC
TGTCAGTATTTATTTCTACTGACCGATGATGAGAAGAAATTCTTTGAGTG
ATTGTTGCTGCATTCAACAACACACCTCAAAGAGCTGAGAAAATTGTTGT
GGCTATGAGACCATTTTTAGCTATGTATCATATAGTATCAACCTGGGTTC
TATTTTAAACCCTTTCTCAAAAACACAAATCAAGCTCTGTGAACAAAGCA
AAAATCTTCTTCAATGATATTAATCAAGCAAGAATTAAAATTGTAAAAGT
TTGTGGAATATTCTCGCATTGTTTCTCTACTTTCTTGCCCTAGACTTTCC
TTTGAAACACCCCAAAACAAGAAATAGTTCAGCCTCAGTCCCATTGCTTA
GAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_p21.g1 MSMg01no132_p21.g1 CHROMAT_FILE:
MSMg01no132_p21.g1 PHD_FILE: MSMg01no132_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:41 2005
         (287 letters)



>mm_chr9_38662073_38662760
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatcac-agataaaatgctttcttactcattaaaaaagagttacctcatgcctctaga 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 340 ctgatcacaagataaaatgctttcttactcattaaaaaagagttacctcatgtatctaga 281

                                                                       
Query: 60  agcaaaatagaaattttgctctaaggaggcagtttctttttccctatggaggaaatttta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agcaaaatagaaattttgctctaaggaggcagtttctttttccctatggaggaaatttta 221

                                                                       
Query: 120 ttggtatggttttgtttttgttttttttttttgagacagggtttctctgtgtagacctgg 179
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttggtatggttttgtttttg-tttttttttttgagacagggtttctctgtgtagacctgg 162

                                                                       
Query: 180 ctgtcctggaactcactctgtggaccaggttggcatggaactaagaaatctgcctgcctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctgtcctggaactcactctgtggaccaggttggcatggaactaagaaatctgcctgcctc 102

                                                           
Query: 240 tgcctgccaagtgtttcgattaaaggcacgtgccaccactgcctgtca 287
           ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 101 tgcctgccaagtgcttcgattaaaggcacgtgccaccactgcctgtca 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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