BAC Information

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BAC

Clone NameMSMg01-133F16
Chromosome9 (Build37)
Map Location 96,786,798 - 96,787,090
singlet/doubletsinglet
Overlap geneAcpl2
Upstream geneXrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216
Downstream geneLOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F16.T7 (MSMg01no133_f16.b1)MSMg01-133F16.TJ (MSMg01no133_f16.g1)
ACCAG340357AG340358
length710692
length of high quality
(start - end)
233 (120 - 352)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no133_f16.b1 PHD_FILE: MSMg01no133_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:09 2005CHROMAT_FILE: MSMg01no133_f16.g1 PHD_FILE: MSMg01no133_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCC
AAACGTCACACAATTGCAGAAACTATCTACAGCTGGCAAAATCATGCATC
TGCTAGAGCACTAGGCAAACCTAAGTCAGCTGCTTCGGACAGTCTGAAGC
AGCCCCACATCCTAATCTCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTCTCTCTCTCTCTGTGTGTTTTTAAAGAAACCAAAATTCAAGAATTC
TCAAAAATATCATTACCGGGTTCCTTCAAGATGAGTAGAAAGTTGAAGGA
GACACCTCGGCATTCTACACACACTGCCAGTTGAGATAGTCCCGTGAATG
ATTNCTGNATTCCCCAACTNACCTTACACACTCACAATATATTATTAAGG
TACAGAATCAGTGGAGACAACATTAAACCATGTGAGTGCCTCCTCGGTCT
GGGATAATAAATGACAGTGACAGCGGTGGTGATCCATCCCAGGTTCCCTG
GAGACCAGTGAATGAGCACTGTCCATTCCTTTAGAGCAGCAGCAGTTCTC
AACCTTCCTAAATGCCACGTGTGACCCTTTAATACAACCCCTCCTGTTGT
GGTGACCCCCAACCATAAAATTAGCTTTGTTGCTACTTCACAACTGTAAT
TTTTTTCTTAGTGTTATGAATCATAACGTAAATATTTGATAAGCAAAGGG
TCTTTTGACA
CTTTTCATGCAGTGGGAGGCTGGNGACGCCTGTTTTCAAAAGGGGGTGAA
CTATAGAATTTTCGCGAAATTCAGAGTGCCACTTGTTTGTGGGGACCTGT
GCTGCCCTGGTTGTCATTACCTTATCTTTCTCACCCAGACTGTCTCTGTT
CAGGTTTGGCCAGAATTCCTGCAGCTGGCAAAAAATCTTGTTTTCTAGAA
GGGGTTTAATTAATGCCTGCAGTTTGAGAGTGAGAAAGGAAGGGTGGTTA
GAGAAAGAGAGATGCCACTGTATGAAAGGGGTGGGAGAGAAGATAGAACA
GTGTAGTCCTAACGATCCATACTAGAGTTCAGCTCCCGGCTCTGTCCCCG
ACAGGACTCTGGTTGGCAGATAACGAGAATGCCCACATTCTGGTATAGGG
GTTACCGCTTAGGGGCAGAATCGCTGAGCTAGAATAAAATGATTTCACAG
CGATGTAAAGAAACATTTTCTGGGCTCACTCTTCTGGTTCTTAAAACGCC
TGTGAACCTGTCTACCAAATGGTCATGCCCATATGGCAAGACATTTGGCT
GTTGTAAGCTTGCGTCCGGCGTGTATCCTGTCCCATCTGGTCCACTGAAC
CACGCTTCTCTCGCTCTTCTAGCTTTGTCCAGCCACCTCTCTCTACAGAT
GCTGTGCTTCCTCGTCTACCACAGCCTTGTGCTCTCACGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f16.g1 MSMg01no133_f16.g1 CHROMAT_FILE:
MSMg01no133_f16.g1 PHD_FILE: MSMg01no133_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:09 2005
         (293 letters)



>mm_chr9_96786598_96787290
          Length = 693

 Score =  505 bits (261), Expect = e-147
 Identities = 285/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagtgccacttgtttgtggggacctgtgctgccctggttgtcattaccttatctttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 493 agagtgccacttgtttgtggggacctgtgctgccctggttgtcattagcttatctttctc 434

                                                                       
Query: 61  acccagactgtctctgttcaggtttggccagaattcctgcagctggcaaaaaatcttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acccagactgtctctgttcaggtttggccagaattcctgcagctggcaaaaaatcttgtt 374

                                                                       
Query: 121 ttctagaaggggtttaattaatgcctgcagtttgagagtgagaaaggaagggtggttaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 373 ttctagaaggggtttaattaatgcctgcagtttgagagtgagaaaggaagggtggggaga 314

                                                                       
Query: 181 gaaagagagatgccactgtatgaaaggggtgggagagaagatagaacagtgtagtcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 gaaagagagatgccactgtatgaaaggggtgggagagaagatagaacagtggagtcctaa 254

                                                                
Query: 241 cgatccatactagagttcagctcccggctctgtccccgacaggactctggttg 293
           ||||||| |  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 cgatccagaagagagttcagctcccggttctgtccccgacaggactctggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)