BAC Information

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BAC

Clone NameMSMg01-133J09
Chromosome9 (Build37)
Map Location 111,180,533 - 111,181,084
singlet/doubletsinglet
Overlap geneEpm2aip1
Upstream geneTmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1
Downstream geneLba1, Dclk3, LOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J09.T7 (MSMg01no133_j09.b1)MSMg01-133J09.TJ (MSMg01no133_j09.g1)
ACCAG340524AG340525
length707709
length of high quality
(start - end)
556 (69 - 624)185 (124 - 308)
definitionCHROMAT_FILE: MSMg01no133_j09.b1 PHD_FILE: MSMg01no133_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:26 2005CHROMAT_FILE: MSMg01no133_j09.g1 PHD_FILE: MSMg01no133_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCATGTACTTTCATGTCTAAAGCAGCTAGTGGCCACCACAAAGTATTT
TTTTCTTCTTTAATAAAGGGTAGATGTCCCATCTCCCAGTTCATCTCAAG
GGGCATTCTCACCTCTCTAGAACATAACTTGTCCCTGTGTCGTTATTTTG
TTCTATCTTCCAGTAGCGTCTCCCTGATGCCTCCCAAATAATCACTAAGC
AAACTGTTTAGTGTTTTAGTTCTGCATCAGGATTGCTGAAGTTGCTGTAA
GCAGACAAAAGTTTAGTTGTCTGTGACAGGTTGTCTGAGCTGTCAGACTC
CAACCCCTACAGGCCAAGTCTGTCCTGGCCCATCCTTCTCTGAGGAAATT
ATTACAGGAGTTAGAGCCGTGTCTGTCTAGGAACTGTCATGGCTGCTCCC
CTCTACAGTTGCAGACTTGAGTAGTTGTGACACTGTGTGCAACACAAGCT
AAAATACTTTTTGGAAAAGTTCACTGTTTCCTGCTTTAAATTGTCCCTAC
CTACCCTGGGGACTAAGCAGATATACTCAATAGGAGTCGACAGCCCACTC
TGGGCAAAGAGAAAAGAAAGTTTGGCTCTGTAAGCCCATAGCCATACCAG
ATCTCCAGAAGTGCAAATTCCTCCATACAGGTGTGAGGAAGGTGAATTAT
TTGGAAG
ATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATCTCTACTGCTGCAAAACAAGAC
TTTATTTGGAGACATGACCCCCTTGATGAAACCTTTAGAGTGATCCTTAA
TCCAATCTCACTGGTATCCTTGGAAGAGATAAGGATACACACACACACAC
ACACACACACACACTCACTCATATACACACACGCACGCACACGCACGCAC
CACACAGAGCAAAGACCATGTGAGGACACAGTGAGAAGGTGTTGCTTGTC
TGGAATCCCAAGAGTGTTCTCAGAAGGAACTAACCCAGCCCACTCCTTGA
CCATTTTTTTTTTCCACCCCCCCCCCGAGAAAGTGACTTCTTTTGGCGCT
CATGCTTACTGTCTAAACCTCATCAACATGTGTTTTAGCACCTAAATGGG
CCAGTGTAGGTTTCATAAGGAGGATGTACAAGTGAGAAAAGGACCTATTT
TGCCTTTTAAATTCTGGTCTACTTTCCTTGCCTGTAGCTATGAAGTAGAA
GATAGTGATTATTAATTCCTCCTTGAAAATTCAAAGCCAATCAGCTCCCT
TTTTTTTAATTAGGTAATTTCTTCATTTACATTTCCAATGTTATCCCTAT
AGTTCCCCATTACCCCTCAACTACCCCTTTTACTTCCACTTCCCCCTCCC
CGCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j09.b1 MSMg01no133_j09.b1 CHROMAT_FILE:
MSMg01no133_j09.b1 PHD_FILE: MSMg01no133_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:26 2005
         (556 letters)



>mm_chr9_111180333_111181284
          Length = 952

 Score =  994 bits (514), Expect = 0.0
 Identities = 544/558 (97%), Gaps = 8/558 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaagcagctagtggccaccacaaagtattttttt--cttctttaataaagggtagatg 58
           |||||||||| | |||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 201 ctaaagcagccaatggccaccacaaagtatttttttttcttctttaataaagggtagatg 260

                                                                       
Query: 59  tcccatctcccagttcatctcaaggggcattctcacctctctagaacataacttgtccct 118
           ||||||||||||| |||||||||||||||      |||||||||||||||||||||||||
Sbjct: 261 tcccatctcccagctcatctcaaggggca------cctctctagaacataacttgtccct 314

                                                                       
Query: 119 gtgtcgttattttgttctatcttccagtagcgtctccctgatgcctcccaaataatcact 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtgtcgttattttgttctatcttccagtagcgtctccctgatgcctcccaaataatcact 374

                                                                       
Query: 179 aagcaaactgtttagtgttttagttctgcatcaggattgctgaagttgctgtaagcagac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 375 aagcaaactgtttagtgttttagttctgcatcaggattgctgaagttgccggaagcagac 434

                                                                       
Query: 239 aaaagtttagttgtctgtgacaggttgtctgagctgtcagactccaacccctacaggcca 298
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaagtttagttgtttgtgacaggttgtctgagctgtcagactccaacccctacaggcca 494

                                                                       
Query: 299 agtctgtcctggcccatccttctctgaggaaattattacaggagttagagccgtgtctgt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtctgtcctggcccatccttctctgaggaaattattacaggagttagagccgtgtctgt 554

                                                                       
Query: 359 ctaggaactgtcatggctgctcccctctacagttgcagacttgagtagttgtgacactgt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctaggaactgtcatggctgctcccctctacagttgcagacttgagtagttgtgacactgt 614

                                                                       
Query: 419 gtgcaacacaagctaaaatactttttggaaaagttcactgtttcctgctttaaattgtcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtgcaacacaagctaaaatactttttggaaaagttcactgtttcctgctttaaattgtcc 674

                                                                       
Query: 479 ctacctaccctggggactaagcagatatactcaataggagtcgacagcccactctgggca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctacctaccctggggactaagcagatatactcaataggagtcgacagcccactctgggca 734

                             
Query: 539 aagagaaaagaaagtttg 556
           ||||||||||||||||||
Sbjct: 735 aagagaaaagaaagtttg 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 952
Length adjustment: 10
Effective length of query: 546
Effective length of database: 942
Effective search space:   514332
Effective search space used:   514332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)