BAC Information

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BAC

Clone NameMSMg01-133N05
Chromosome9 (Build37)
Map Location 30,297,584 - 30,297,870
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133N05.T7 (MSMg01no133_n05.b1)MSMg01-133N05.TJ (MSMg01no133_n05.g1)
ACCAG340696AG340697
length709703
length of high quality
(start - end)
605 (69 - 673)298 (67 - 364)
definitionCHROMAT_FILE: MSMg01no133_n05.b1 PHD_FILE: MSMg01no133_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:44 2005CHROMAT_FILE: MSMg01no133_n05.g1 PHD_FILE: MSMg01no133_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAACACGGAGGCGCGGA
ATTCTCAACTGTTCTATACCGGGTGGCTGAGAAGCACCTGTAAAAATGTT
CAGCATCCTTAATTATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAGCACTCCTTCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGGAATCAGTCTGGAGGTTCCTCAGA
AAATTGGACATAGCACTACCGGGAGGATCCCGCAATACCTCTCCTGGGCA
TATATACAGAAGATGTTTCAACTAGTAAGAAAGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATAGATACAGAAAATGTGGTACATTTATTACAATG
GAGTACTACTCAGCTATTAAAGAGAATGAATTTATGAGACTCTTAGGCAA
ATGGTTGGACCTGGAGGGCATTATCCTGAGTGAGGTAACCCAATCACAAA
AGAACTCACATGATATGTACTCACTGATAATTGGATATTAGCCCAGAAAC
TTAGAATACCCGAGATATAAGTTACAATTTGCAAAACACATGAAACTCTA
GAAGAACGA
GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCCGCAAAATTCTGCTCTCTATCAGAACCAGATGGAATTCAG
CACCCTTCTCCTTTCTCCCCCTCTCAAGGTGCTTGCAGACAGCTACTGCT
TTTTAAATCAAATGGCAGAGCTCCTCAGGGAGATAGGGACAAAGCCTTGG
TTTTATTGCCCGTCACTAAACAACCTGTGGCACACCATGTGAGTCCCTCG
GGATCACACCTATTTGGGAAGGAGTCCCTTTCTTGACCAGTTTGTAAATC
TACTTCTTCAGATGTCATCTTTAGCCAGGTGGGGCTTTTGTTACATCAGT
AGGTTTTTTTTTGACCCCCCCACACCTTTTCTGGAAGCAGCCATGAGACT
GCTGGTAGCAGTCTGGCAACAAAAAGAATGAGGTCTGTTTTCATACTTAT
ATCGAATGAAAATGAAAATTACATATATGCTTTGTACACGGTATACACTG
TTTACAGGACTGTGTGTCAAAATGCGTAGTTGTCCATCTTAATTTGAGCT
CACCATATTTCAGCTTCATTTGGTAAGCCGCCATGATTTGAAACATTATA
TTGGTAAGTTGGTTTTCCTCCCGAAGGTGCGTATTTAACTCACCTAATTG
AGTATTTAAATTTATTGACAATGTCAATCTATAAGCCAGTTTTTGTCATC
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_n05.g1 MSMg01no133_n05.g1 CHROMAT_FILE:
MSMg01no133_n05.g1 PHD_FILE: MSMg01no133_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:44 2005
         (298 letters)



>mm_chr9_30297384_30298081
          Length = 698

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgctctctatcagaaccagatggaattcagcacccttctcctttctccccctctca 60
           |||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 487 attctgctctctgtcagaaccagatggaattcagcacccttctcctttttgctcctctca 428

                                                                       
Query: 61  aggtgcttgcagacagctactgctttttaaatcaaatggcagagctcctcagggagatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggtgcttgcagacagctactgctttttaaatcaaatggcagagctcctcagggagatag 368

                                                                       
Query: 121 ggacaaagccttggttttattgcccgtcactaaacaacctgtggcacaccatgtgagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggacaaagccttggttttattgcccgtcactaaacaacctgtggcacaccatgtgagtcc 308

                                                                       
Query: 181 ctcgggatcacacctatttgggaaggagtccctttcttgaccagtttgtaaatctacttc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctcaggatcacacctatttgggaaggagtccctttcttgaccagtttgtaaatctacttc 248

                                                          
Query: 241 ttcagatgtcatctttagccaggtggggcttttgttacatcagtagg 287
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcagatgtcaactttagccaggtggggcttttgttacatcagtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)