Query= MSMg01no134_c09.b1 MSMg01no134_c09.b1 CHROMAT_FILE:
MSMg01no134_c09.b1 PHD_FILE: MSMg01no134_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:16 2005
(773 letters)
>mm_chr9_75894036_75895206
Length = 1171
Score = 1427 bits (738), Expect = 0.0
Identities = 765/776 (98%), Gaps = 8/776 (1%)
Strand = Plus / Minus
Query: 1 gatcaaatgccatcgccacacatgtgagaaatgccct--acctgaaaaaaggatgcttct 58
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 971 gatcaaatgccatcgccacacatgtgagaaatg---tagacctgaaaaaaggatgcttct 915
Query: 59 tttgaaattaaattagatctcttaaaaggaaactagagatcgacattcaaaaagaaatct 118
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 914 tttgaaattaaattagatcgcttaaaaggacactagagatcgacattcaaaaagaaatct 855
Query: 119 atttttttttcatctcatctgaattatatgcatggggcattttatggtaatgttaaacat 178
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 a-ttttttttcatctcatctgaattatatgcatggggcattttatggtaatgttaaacat 796
Query: 179 tccatattccatcttttttattattgaatattaatttctacattaacccaacaaaatcag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tccatattccatcttttttattattgaatattaatttctacattaacccaacaaaatcag 736
Query: 239 aaatatgtaaaacattatcattggcaatactgtagattactataggaaccttcatctttc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaatatgtaaaacattatcattggcaatactgtagattactataggaaccttcatctttc 676
Query: 299 agaatgatccaagggcaattcttttgttgggctcctcctcgaaggaggggctgactttat 358
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agaatgatccaaggacaattcttttgttgggctcctcctcgaaggaggggctgactttat 616
Query: 359 aaagctgacattggaaaagcctttattcagaatatctatatacccagttagtttgaagcc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaagctgacattggaaaagcctttattcagaatatctatatacccagttagtttgaagcc 556
Query: 419 tgtctttggcaatctaattaatatgtatcgataaccaaagaaatgatgtgctataaaggc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtctttggcaatctaattaatatgtatcgataaccaaagaaatgatgtgctataaaggc 496
Query: 479 aattaaacttccataggcaatacttcttgattttttcattcagaacattaaggagagtat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aattaaacttccataggcaatacttcttgattttttcattcagaacattaaggagagtat 436
Query: 539 ccacttatttctatcaatctgtagacaatcagtgaaagaaactggcatgcctagtaagct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccacttatttctatcaatctgtagacaatcagtgaaagaaactggcatgcctagtaagct 376
Query: 599 gtttccccatagcctttagccagagttcaaaaagaagtttttaaaaggtctaaaagtgtg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtttccccatagcctttagccagagttcaaaaagaagtttttaaaaggtctaaaagtgtg 316
Query: 659 aactcttctctatctgtatagttacagaaaagcataagagcattaaacgatggtcacttc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aactcttctctatctgtatagttacagaaaagcataagagcattaaacgatggtcacttc 256
Query: 719 tcacat-gcagcagattatagacacagaataaatattttaaaatcatccaaaatta 773
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcacatag-agcagattatagacacagaataaatattttaaaatcatccaaaatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 773
Length of database: 1171
Length adjustment: 10
Effective length of query: 763
Effective length of database: 1161
Effective search space: 885843
Effective search space used: 885843
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_c09.g1 MSMg01no134_c09.g1 CHROMAT_FILE:
MSMg01no134_c09.g1 PHD_FILE: MSMg01no134_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:16 2005
(812 letters)
>mm_chr9_75798406_75799622
Length = 1217
Score = 1456 bits (753), Expect = 0.0
Identities = 799/817 (97%), Gaps = 5/817 (0%)
Strand = Plus / Plus
Query: 1 ccattttctcctaaagactgatcatatggacacatacaaagaccagaaaaacatgttaag 60
|||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |||||
Sbjct: 201 ccattttctcctaaagacggatcatatggacaaaaacaaagaccagaaaaacatcttaag 260
Query: 61 taaatgacatcacacagcaaatggaccttacagatactaaagacatttgacctaaacacg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 taaatgacatcacacagcaaatggaccttacagatactaaggacatttgacctaaacacg 320
Query: 121 tgatattcaagaatctcagaataatgttaagggaatactttaaaaattctgattgcatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatattcaagaatctcagaataatgttaagggaatactttaaaaattctgattgcatat 380
Query: 181 gatgtcagctgtagctcttctttcttaatgtacttgcaatctaagagctaatgccctaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtcagctgtagctcttctttcttaatgtacttgcaatctaagagctaatgccctaac 440
Query: 241 atgaaggaattcatatttcctcacatatggtaggcggcctagttattagacatcacagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaggaattcatatttcctcacatatggtaggcggcctagttattagacatcacagct 500
Query: 301 gtatgcctggtttcagcaacatactatgggaataggctagtctcaagcatgtcaccttta 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatgcctggtttcagcaaaatactatgggaataggctagtctcaagcatgtcaccttta 560
Query: 361 taatcatatggcattaacagcatcaccacaggaagaaactactgttaaatggaagagctg 420
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 taatcatatgacattaacagcatcaccacaggaagagactactgttaaatggaagagctg 620
Query: 421 aagcagccacaacacataaaatagggtgtctttacaatgacctcactgataaacattaaa 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcagccacaatacataaaatagggtgtctttacaatgacctcactgataaacattaaa 680
Query: 481 gttaactgaagtgaatatggtagcccttgaaaagaggtgtctatgtcaatactactgttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttaactgaagtgaatatggtagcccttgaaaagaggtgtctatgtcaatactactgttt 740
Query: 541 atgtgtttgtttttttttaatttcactgttactgtcagtggattataaaattgaactcca 600
|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 741 atgtgtttttttttttttaatttcactgttactctcagtggattataaagttgaactcca 800
Query: 601 gttagat-----ggaataagatatttgtcaagataaatacttctttatgtgataatttca 655
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttagattagatggaataagatatttgtcaagataaatacttctttatgtgataatttca 860
Query: 656 tgatagtcataggttgatggcaggaattttaatattctgcaattcccctaaggccagctt 715
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgacagtcataggttgatggcaggaattttaatattctgcaattcccctaaggccagctt 920
Query: 716 taattgcagagtaacttcagtggaatctctaaccattagtctcaacggattataaaactg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 taattgcagagtaacttcagtggaatctctaaccattagtctcaacggattataaaactg 980
Query: 776 aactgcaagtagattggaaagtcatttgtcaagataa 812
|||||||||||||||||||||||||||||||||||||
Sbjct: 981 aactgcaagtagattggaaagtcatttgtcaagataa 1017
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 812
Length of database: 1217
Length adjustment: 10
Effective length of query: 802
Effective length of database: 1207
Effective search space: 968014
Effective search space used: 968014
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
