BAC Information

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BAC

Clone NameMSMg01-134E22
Chromosome9 (Build37)
Map Location 83,967,766 - 83,968,212
singlet/doubletsinglet
Overlap geneBckdhb
Upstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150
Downstream geneEG666669, LOC666672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134E22.T7 (MSMg01no134_e22.b1)MSMg01-134E22.TJ (MSMg01no134_e22.g1)
ACCAG341054AG341055
length1,2071,111
length of high quality
(start - end)
281 (124 - 404)676 (89 - 764)
definitionCHROMAT_FILE: MSMg01no134_e22.b1 PHD_FILE: MSMg01no134_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:35 2005CHROMAT_FILE: MSMg01no134_e22.g1 PHD_FILE: MSMg01no134_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCCTTTNNNAATCATTGGNCGCATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCATGCCTACTGCTATACCATTAACGAAGAATCCTCTGGGGA
AATCACAGGTTCAAGGCTTTAGATTTGGATGTTTACCAGATGGTCAAGTT
GTCAAGTGTCAAGCTGCCTTGTAAATACCTATGGTTTTTTTTTTTTTTTT
TTCATCTGTAGATGAGTGTAACTCTCAACCTTGGCCAGAGAAGGTTTCTT
AAATTAGTGGGTGGTGGTTGGTGCAAAGATTTAGCACTGTTCAAAGAGCT
GGAAGTAAATTACTGTGAGCGTTCAGCCATAGATGGGATGGCTATATTGA
CTCTCCCACCTCAAGGCTCAGGGAACATCTCAAAAGAGGAGGTAGAGATA
ATGTATTAGGCAGAGAATGGGGAGGGGGAGAGGATTTTTTCTTTTTCCCC
CCCCTTTTTTCTCCCTCCCTTCTTCCTTTTTTTTCTTCTCCAATAGTTTT
TTTTTTCTTTCTTTCTTCCTTTCGTTANTTTTATCTCCCTTTTCTATTTT
CTTTTTTCCTTTTTTGTCCTTTTTCTTTTCTGATTCTTCATTCTTTTCCT
TTTTTCTATTTGCCTGTCTCTTTACTATTACCATTCTTTTTTTTTCCACA
TTATTCTTTATTATAACTTTTTATCTTGTATATTTTATTCCACCTATTTT
TTCTTTTTTCCTTTTTTTATATTTTTTTCTTTTCCCTTTTTTTTTTTTTT
TCTAGTATATATTTTCCTAATTTTTTTTTTCTCCTTTCTATTTAATTTTT
TCTCCTCTCTTTTTTTGTTGTCTATTTTTTCTATTATTTTTTCATCTATT
CTTTTTCTATCATTTTTCTTTTTTTTTCTTTGATATCTTCTTCCTCTTTA
CCTTTATTTTTTTATATATCTCCTCTCTCTTTTTTTTATCCCCCTTTTTT
TTTTTTTCTCTTCTATTTCTTCTATTTATTTTCTTCCTTAACTTATGTTT
TTTTTTTTCTATTTTTATCTATCTTATTCCCATTTCTTTTTTTTTATTTT
TTTTCTGCTTACCTTCTTATTTTATTCTTTAACTCCCCTTTCTATTTTTC
TACTCCCTTCCTTCTCTTTGTTATGTTTATCTTTCATCTTTCTTTTTTTT
TTAACCTTCCTTTATTAATTCTTTCTTATCTCTTCCTATTACTCTTTATT
TTTCTTT
NCGGTTTTTTTTNTACTCAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATTTCCTTTCTAGGATCAT
GTTCACCCTCCGGCTATCTGACTGTCTTAGTCAGACCCCCTATTCCTGCA
CAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCT
TACACTTCCACATTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCA
AGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTT
TACTGGCTTGCCTCACCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCA
AGGCTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTG
ATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC
TCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACA
CAAAACTAGCCAGTACAATGACCTACCACATATCACACTTATCAAAGATT
TTACAATCCCACAGTGCTCTGTTTGACTGTGTTGTATTATATTCCATACT
AAATCACAGTTTATCATCGATTCCTTTTAATAAACTCAAAATGTTTAAAG
CAAGGACTCTATGTCTCATATCAAATGCCTGTATTAAAACACTGCCTAAA
GTACTGAGTAAAAAACTAACAATTACCCACTGACTAAAACAGAGTGAGGG
GAGGGAAGGCAGGTGGTGGTAAGTTTCTTTAAATACCCTTATCTTTATTA
TGTTCTCTCTCTCTAGTTTTTCTATCTCTTTTTCTGTATCCTTGCTATTT
CTCTTTTTTCCTCTCTTCCCTCTCTTTTATTACTTTTTCTTTTTTTTTCA
TCTTTTTCCTTCTTTTTTTCTTCTCTTTTTATCATTTTATTTTTTTTTTT
CTCTTTTTTTCTTTTCTCCTTTTCTTTCACTTCTTTTCTTTTTATTTCTG
TTTTCTTTTTTTTTTTTTTTCTTTTTTTGATTTTCTTATCCATACCTATT
CTTATCTTTTTTTACTTTTTTTTTTTCCTTTTTTCTCTTTTATTTTTTTC
CTTTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_e22.g1 MSMg01no134_e22.g1 CHROMAT_FILE:
MSMg01no134_e22.g1 PHD_FILE: MSMg01no134_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:35 2005
         (676 letters)



>mm_chr9_83967137_83968212
          Length = 1076

 Score =  864 bits (447), Expect = 0.0
 Identities = 447/447 (100%)
 Strand = Plus / Minus

                                                                        
Query: 230  tggcttgctcagcctgctctcttatagaacccaaggctaccagcccagagatggtcccac 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 tggcttgctcagcctgctctcttatagaacccaaggctaccagcccagagatggtcccac 1017

                                                                        
Query: 290  ccacaaggggcctttcccccttgatcactaattgagaaaatgccttacagttggatctca 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ccacaaggggcctttcccccttgatcactaattgagaaaatgccttacagttggatctca 957

                                                                        
Query: 350  tggaggcatttcctcaactgaagctcctttctctgtgataactccagctgtgtcaagttg 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  tggaggcatttcctcaactgaagctcctttctctgtgataactccagctgtgtcaagttg 897

                                                                        
Query: 410  acacaaaactagccagtacaatgacctaccacatatcacacttatcaaagattttacaat 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  acacaaaactagccagtacaatgacctaccacatatcacacttatcaaagattttacaat 837

                                                                        
Query: 470  cccacagtgctctgtttgactgtgttgtattatattccatactaaatcacagtttatcat 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  cccacagtgctctgtttgactgtgttgtattatattccatactaaatcacagtttatcat 777

                                                                        
Query: 530  cgattccttttaataaactcaaaatgtttaaagcaaggactctatgtctcatatcaaatg 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  cgattccttttaataaactcaaaatgtttaaagcaaggactctatgtctcatatcaaatg 717

                                                                        
Query: 590  cctgtattaaaacactgcctaaagtactgagtaaaaaactaacaattacccactgactaa 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  cctgtattaaaacactgcctaaagtactgagtaaaaaactaacaattacccactgactaa 657

                                       
Query: 650  aacagagtgaggggagggaaggcaggt 676
            |||||||||||||||||||||||||||
Sbjct: 656  aacagagtgaggggagggaaggcaggt 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)