BAC Information

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BAC

Clone NameMSMg01-134I15
Chromosome9 (Build37)
Map Location 109,046,798 - 109,047,370
singlet/doubletsinglet
Overlap geneE330009P21Rik
Upstream geneBsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1
Downstream geneFbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134I15.T7 (MSMg01no134_i15.b1)MSMg01-134I15.TJ (MSMg01no134_i15.g1)
ACCAG341229AG341230
length1,1911,232
length of high quality
(start - end)		723 (89 - 811)738 (88 - 825)
definitionCHROMAT_FILE: MSMg01no134_i15.b1 PHD_FILE: MSMg01no134_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:02 2005CHROMAT_FILE: MSMg01no134_i15.g1 PHD_FILE: MSMg01no134_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCGTTCTTCTTTTTTACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCAGTTTCCAGGTCACCCTAAGCTATGCAGTGAGTAC
CAGGTTAGCTATGGGTGCACAGTGAGACCTTGTCTCAAAAGCAAAAACCC
CAAATGACAAGAAACAATAACTATATTATGGGGTGGCAAAATGTTTAGGA
CAGTGGTTCTCTACGTATAAGTTGTGAACCCTATGGCAAATTTCTATCCT
CAAAAAAATACTTAACTCACAAATCTTAACAGTAACAAACTTACCATTAT
GAAGTAGCAATGAAAGTACCTCTATGGTAGGACAGACCCCCCTCCCCACA
CTGCCACATGAGAACTGTATTACAATTCAGTAGGAAGCATTGGTAAGTTT
GAGAAGCGCTGTCTTAGAGGATAGATACACTTACCTACGGAGCCTGACAA
CCTAGTTCAATTCCTGAGGTACCACAGGATGGAGGAGAGATCCAAATCCC
TCAAGTTGTCCCCTGACCTCCAACATGTGTGCTTCTGGCATGAATACCTA
CACAAAGATAATAATGTAAAACCAATTTGTAAAAGAAATCCTCATTTCTC
CTGTGTCTCCCACAAGTGCTCAGAGTAAGCTATAAATGCTTGTCATTGTT
TTGCATTTTTAGTCTTTGAAGACAGGGTTTCTCTGTGCAACCAAGGCTAA
CCTGGAATTTGTTCTGTAGACTAGACTGTCCTCAAACTTGGAGATCCACT
GGACTATACCTGATTGTGGATAACATTACGACAATTCTCTACATGATGTT
TTTATGAAGGGAGAAGGAGGCTCCTTGTCCAGATGTGAACTTGTGCCTGT
TTGATGGGCACTACAATAGCAATCTACAGTTTACTCAGGGAGACTTCCAT
TTCTGTCATGCACTAAGGACTGGGTTCTACTATTCTTTTCCCCGAAAGGT
GGCTTTTCAAAGGTTAAACTAACGGACGGCCCCCACCCCCCCGTGTCTAA
AACCTGGTCTTTCCTTGTTCAAAGAAATGGGTTTTCCCAAAACCTGAATT
TTTTTAACCAAAGGACCGTTTTTTTTTTGTTTATTTCAAACAAACATGCC
CTGGAGAAGAGGGAAAAGGTTTTTTCTTAACCCCGAAAGAAAATTGCTCT
TACTTTATTGAAAAAATAAAATGCCCTGTTTATTTCTTTTT

CCCGTTCCTTNTTTAACATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAGAGGAGTTTAGGTTGGCC
TCAAACATGAAGTCTCCCGTCTGCAGAAGCCAGGAGAGGGCATTTGACCT
CCTGGTACTGAGGTTACAGAGAGTTGTGAGCCCCCACATGGGTACTGAAA
AATCAAACCCAGGTCCTCTAGAAAAGCAGCCAATACTCTTAACCACTGGC
CCATCTCTCCAACCGCTAAACAGATCCTTCTTCTTGTATTTAAGCTAGCA
TTTCAATAGTGGCCATCTGGCAAAGTGACCATCAGGTGACCAGTAGAGAG
ATGAGCTGGACATAGATGTATCTTTTAGAAGGGACCACCATCACAGGCCA
CTGCAGTTGTTATATAAAGACATATTTGCATGTTCACAATGGTTGGAAAC
CCTATAATACCTCCTTAACAACATTAAGGAGGGACTGAGAAAGAGTGCAC
CCAGGTTCTTAACCAGTGTCTGCTGCAAACAGTTGGGACCTTGCTGGGTA
TGGTAAGATGTCTGTAGCTCTTAATAACAGGCTTCAGTGAATTAACAGGT
TAGGTTGGGAACCTTGCCATCATAGTCTTCAACTTCCAATAAGGCATGTG
GATACTCTGAGCTTTCATAAAGAGAAAACAAAGGCTCAAGACACCTTATA
GAGAAATGGAGAAGGAAGGAGAAAGGAGAAGCTCAGATCCTGCAGCCCAG
GCAGTGGACAGAATACAGAAGGCTCTGAAGATGACTGAGTCCAGGAACAC
CATCTGACTGCAACCACATTAGACCTTGTCCTGCCTAGTTTTATGTCAAC
TTCACACAAGCTAGAGTCATCTGAGAGAAGGAAATCTGGATGGGGAAAAT
GTCTCCAAGTGATCAGGTTGTAGGCAATCTTGTAGGGCACTTTTTAAAGT
AATTATTGATGTGGGAGGGCCCCCCCCCCTGTGTGCTATGAAAGGCCAAT
GTGAAAATTGTCCCCGGGGATTTATTTAACCTAAGTGGTTGTTTAATCCA
AAAAAGGGCGGGAGGCCGGGCCTACCCCCTTAATTTTATTCACTCCGGGG
CCAAAGCAGGTGGGATTCTTGAATTTTAGACCATCCCTGGTCTTTTTACA
AGGGCTTTTATAGACAAATAATTTTTTTTACCTTCGGCCAAATTTTAAAA
TTTTGTGTTTATTTCGGTTTGAGAATATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_i15.b1 MSMg01no134_i15.b1 CHROMAT_FILE:
MSMg01no134_i15.b1 PHD_FILE: MSMg01no134_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:02 2005
         (723 letters)



>mm_chr9_109046254_109047376
          Length = 1123

 Score =  731 bits (378), Expect = 0.0
 Identities = 527/580 (90%), Gaps = 17/580 (2%)
 Strand = Plus / Minus

                                                                        
Query: 114  agtggttctcta-cgtataagttgtgaaccctatggcaaatttctatcctcaaaaaaata 172
            |||||||||||| | |||  ||||||||||||||||| |||||||||| ||  |||||||
Sbjct: 1117 agtggttctctatc-tatgggttgtgaaccctatggc-aatttctatcttc--aaaaata 1062

                                                                        
Query: 173  cttaactcacaaatcttaacagtaac-aaacttaccattatgaagtagcaatgaaagtac 231
            ||||| | ||||||| |||||||| | |||| ||||||||||||||||||| ||||||||
Sbjct: 1061 cttaaattacaaatcataacagtagcaaaac-taccattatgaagtagcaaagaaagtac 1003

                                                                        
Query: 232  ctctatggtaggacagacccccctccccacactgccacatgagaactgtattacaattca 291
            |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1002 ctctgtggtagggcagacccccctccccacactgccacatgagaactgtattacagttca 943

                                                                        
Query: 292  gtaggaagcattggtaagtttgagaagcgctgtcttagaggatagatacacttacctacg 351
            |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 942  gtaggaagcattggtaaggttgagaagcactggcttagaggatagatacacttacctacg 883

                                                                        
Query: 352  gagcctgacaacctagttcaattcctgaggtaccacaggatggaggagagatccaaatcc 411
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 882  gagcctgacaacctagttcaattcctggggtaccacaggatggaggagagatccaaatcc 823

                                                                        
Query: 412  ctcaagttgtcccctgacctccaacatgtgtgcttctggcatgaatacctacacaaagat 471
            ||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 822  ctcaagttgtcccctgaccccca-catgtgtgcttgtggcatgaatacatacacaaagat 764

                                                                        
Query: 472  aataatgtaaaaccaatttgtaaaagaaatcctcatttctcctgtgtctcccacaagtgc 531
            |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  aataatataaaaataatttgtaaaagaaatcctcatttctcctgtgtctcccacaagtgc 704

                                                                        
Query: 532  tcagagtaagctataaatgcttgtcattgttttgcatttttagtctttgaagacagggtt 591
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 703  tcagagtaagctataaatggttgtcattgttttgcatttttagtctttgaagacagggtc 644

                                                                        
Query: 592  tctctgtgcaaccaaggctaacctggaatttgttctgt--agactagactgtcctc-a-- 646
             ||||||| ||||| ||||| ||||||| |||||||||  |||| || |||  ||  |  
Sbjct: 643  cctctgtgtaaccatggctaccctggaacttgttctgttcagaccaggctggacttgact 584

                                                    
Query: 647  --aacttggagatccactggactatacctg-attgtggat 683
              ||||||||||||||| ||||| | | || |||||||||
Sbjct: 583  tgaacttggagatccacgggactgtgc-tggattgtggat 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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