BAC Information

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BAC

Clone NameMSMg01-134J05
Chromosome9 (Build37)
Map Location 10,225,110 - 10,225,457
singlet/doubletsinglet
Overlap genenone
Upstream gene9030420J04Rik, Cntn5
Downstream geneLOC665154, LOC100039970, LOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134J05.T7 (MSMg01no134_j05.b1)MSMg01-134J05.TJ (MSMg01no134_j05.g1)
ACCAG341256AG341257
length1,2291,198
length of high quality
(start - end)
418 (39 - 456)367 (473 - 839)
definitionCHROMAT_FILE: MSMg01no134_j05.b1 PHD_FILE: MSMg01no134_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:06 2005CHROMAT_FILE: MSMg01no134_j05.g1 PHD_FILE: MSMg01no134_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTTTTNNNNAAGTCATTTCGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCCTCTTTAAAATATATATACTTTTCAACTACCTAATTTCT
TTAAAAATACATATTTTCCTAATGTAAACATTTCACTTCCTGTTAATATA
AACTTTACATCATTGGCACTGTGCTTTTTAACATGTTTGCCGTTTAAAGT
GATTATGTGAAACATCTTCATCTGGGCATAGCTGAATTTTTGTCTGCTGT
GTATTTTTGTATTTATCACTTACTGAGTTTGAGGCTCTTTTCAGATTCCT
CATTTCAAGCCTGAAGTGTGTCATGCTTCCAAGGACCTTATCTTGACTAG
GAAACACATGAGATCTAAGTGTTAGGTATGACCATTGGCACTGAAACTAA
AATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATACCCCCATATATGTATATATATATACACACAAAAACATA
TATATATATATATATATATATATATATATATATATATACTAGAGTGAGCC
TGTCTTATTTCCTTCAAATTTCCTCTTTTCCTCTGCTCATTTAATATTCT
ACTGATAATACATCATGACCAAGGAAACATCTAAAAGAAAGTTTTTAATT
TGCCTCTCAGTTTCAGATAGTAATGGTCCATGATAATGGAGTGAAAAGCA
GCTCAGAACTCACACCTTGATCTACAACCACAAGGCAGAGAGAGAGAGAG
AGACAGAGAGAGACAGAGAGACATATAGACAGAGAGAGACAGAGATAGAG
AGATACAGAGAGAGAGAGACAGATAGAGACATACAGGGACTGATAGACTC
CTAAGGAGAAAGAAACTCTACTCCTATGATGGACTTCCCAAACTCAAATA
TTGTCCCCAGTGCTTCTCCCACAAAATCCTTGCTTCTTCCTTTTCAAAAG
TTCCCTTAATCTGGAGTGAAATTACCACCCCATTTTTGCCCTTTTTCCCT
CTAATTATAACACTCCCTTAATTTATAACCCCCAATAATTTTAAAATTTT
TTCCTTGTATCTGTTCCTCCACTAAACATTTAATTCTTTCTTTATTATAA
ACTCTTTTTATTTTTCCGGACTTATATTACACATTTTTTATTGGATATAT
TTTTTTTTTTTACTCGTTATCCACACTGTTAACATCACCTATTCTTTATA
ATAAATTCCTTCTTTTCTCTCCGCTGACA
NCCCGTTTTTTNNNNGATCAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAAGCTCAGAAACCATG
CAAAAAAGCCAGCATACCGCCCTTCACTTGTAATGGAGATGATAGATAGC
TGGGTCTTGCTGGCAGGGAAACAGAGTTAAAATAGTGGACAAGTAGTGAG
AGCCCCTATCTCAAAAAGGGGTAGATAGTGACTGGGGAAATGCTTGTGGT
TGTTCTCTGCTCTTCACATGCACATGAACACAGTTGAATCTTGGAACCAC
TCACTATGGTTGGAGTTACATCCCTTAAACTGATATCCATATGAGCATGC
AAACATCTTTGAATCTTTACCGAGTGGTGTCCCTCTCAATCGCTTATGCA
ATATCATTGTTAAGGGACAGAATGTGGGTTTATCAAACATAAACCTAGTT
TACAGTGTACCTTCTATACATGTCCATTATTGTCACTCTATGCAGGAGAG
TATATTCATCCTGTACCCAGCATCTCATACAATCACTGAACAGAGTTCTA
CATTTTTGTTCATTTCTCCTCCTCCTCCCTCCTCCTTCTCCTCCTCCTCC
TCCTTTCTTTCTTTCTTTCTTTCTTCATTAAATAAACATTCTTGCCTGTT
GTGTGTTAGGTGCTTAATCTTCTTTTCTGTTTTTCTTTGTTTACTTCGAA
GACAGGCTGTCTCTGTGTAGCCAAGGCTGGCCTGGAACTTACTAGTATAT
CAAGCTGATCATGAACTAATGCAGTCATCCTGTATCAGATTTCCAGGTGC
TGGGTTTTTAGCTGTGAGAATCACATCTGCCCATTAATGTTGTTGAATAG
ATAAACCTAGGTTCTAAGTTGAAGTTGGATTTGGACATATTTTATGCTCT
TCTATGGTTTTAATAGAGAATATGTGGACCATAATAGTTCCCCAAAATTT
ATGAAATCCTTACCCCCCTACCAGTTCAAAAACATTTTTAATACAGCCTT
TTTAAAAAATTAAAAAAGAGGCCGCCTGGGCATTTTTTTTTTAAATTACC
CCAACATTGGCTCCAGGCAAAACAACCTTTTTTGGTTCTTAACTCCCCAT
TCCCCTTTATAAAGTTCTCTTTCTATACTTTGCGGCATCCTTTTTTTCTC
CCTTTTTGTTTATTAGGGCTTTATTTTCTTCATACGTCACCATACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_j05.b1 MSMg01no134_j05.b1 CHROMAT_FILE:
MSMg01no134_j05.b1 PHD_FILE: MSMg01no134_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:06 2005
         (418 letters)



>mm_chr9_10224894_10225712
          Length = 819

 Score =  603 bits (312), Expect = e-177
 Identities = 339/348 (97%), Gaps = 1/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattcctc-tttaaaatatatatacttttcaactacctaatttctttaaaaatacatat 76
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattcctcttttcaaatatatatacttttcaactacctaatttctttaaaaatacatat 505

                                                                       
Query: 77  tttcctaatgtaaacatttcacttcctgttaatataaactttacatcattggcactgtgc 136
           |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 tttaataatgtaaacatttcacttcctgttaatgtaaactttacatcattggcactgtgc 445

                                                                       
Query: 137 tttttaacatgtttgccgtttaaagtgattatgtgaaacatcttcatctgggcatagctg 196
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttttaacatgtttgcagtttaaagtgattatgtgaaacatcttcatctgggcatagctg 385

                                                                       
Query: 197 aatttttgtctgctgtgtatttttgtatttatcacttactgagtttgaggctcttttcag 256
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 384 aatttttgtgtgctgtgtatttttgtatttataacttactgagtttgaggctcttttcag 325

                                                                       
Query: 257 attcctcatttcaagcctgaagtgtgtcatgcttccaaggaccttatcttgactaggaaa 316
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcctcatttcaagcctggagtgtgtcatgcttccaaggaccttatcttgactaggaaa 265

                                                           
Query: 317 cacatgagatctaagtgttaggtatgaccattggcactgaaactaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacatgagatctaagtgttaggtatgaccattggcactgaaactaaaa 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 819
Length adjustment: 9
Effective length of query: 409
Effective length of database: 810
Effective search space:   331290
Effective search space used:   331290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)