Query= MSMg01no134_o07.b1 MSMg01no134_o07.b1 CHROMAT_FILE:
MSMg01no134_o07.b1 PHD_FILE: MSMg01no134_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:46 2005
(469 letters)
>mm_chr9_115234893_115235761
Length = 869
Score = 739 bits (382), Expect = 0.0
Identities = 391/394 (99%)
Strand = Plus / Minus
Query: 1 aaagagtctcagacactccaaacacacaagctccatgcctggaatgaagaatccggatat 60
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 394 aaagagtctcagacactccaaacacacaagctgaaagcctggaatgaagaatccggatat 335
Query: 61 ccaagcctgccaggatctcaaataccagctccggttaagggccaaggaactctgacccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccaagcctgccaggatctcaaataccagctccggttaagggccaaggaactctgacccct 275
Query: 121 ttgtaactcccgcaagctgggagtttcaataccagaggccttcctggaacctgctgtagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgtaactcccgcaagctgggagtttcaataccagaggccttcctggaacctgctgtagc 215
Query: 181 aactgccgcagcagcctcctcctcctgctgctcctcttcctcctcctgcccctcctactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aactgccgcagcagcctcctcctcctgctgctcctcttcctcctcctgcccctcctactt 155
Query: 241 ctcttcctccaccaaatgctcctcctacttctcttcttcctccacctcctcctactgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ctcttcctccaccaaatgctcctcctacttctcttcttcctccacctcctcctactgttc 95
Query: 301 ctcctccatcttttcttcttcctcctgctcctcctcctctccctcctcctcctgctgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 ctcctccatcttttcttcttcctcctgctcctcctcctctccctcctcctcctgctgctc 35
Query: 361 acaaggcccaagcggtacagcagctaccaaatcc 394
||||||||||||||||||||||||||||||||||
Sbjct: 34 acaaggcccaagcggtacagcagctaccaaatcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_o07.g1 MSMg01no134_o07.g1 CHROMAT_FILE:
MSMg01no134_o07.g1 PHD_FILE: MSMg01no134_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:46 2005
(701 letters)
>mm_chr9_115122221_115123320
Length = 1100
Score = 1317 bits (681), Expect = 0.0
Identities = 696/701 (99%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 1 gtgaagattaatcatttcagagccccctagtggttcaggggagggggaagaacgaagcgt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaagattaatcatttcagagcccccaagtggttcaggggagggggaagaacgaagcgt 260
Query: 61 tgggacatttgcttgcgtggtcttacttgcatatctaaggggagagtgacacggcctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggacatttgcttgcgtggtcttacttgcatatctaaggggagagtgacacggcctggc 320
Query: 121 tacacagagctcagcagatgtcatcacctgactctgcagagggctatcccaaggcagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacagagctcagcagatgtcatcacctgactctgcagagggctatcccaaggcagaat 380
Query: 181 gtagagtgcctgcctggccagagacatcctgggacagctggattctcactttagtcgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagagtgcctgcctggccagagacatcctgggacagctggattctcactttagtcgaat 440
Query: 241 tgtagcggaaacaatattaggaaatctgcctggatttgcttagttgtcatctgatgacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagcggaaacaatattaggaaatctgcctggatttgcttagttgtcatctgatgacaa 500
Query: 301 ttttcttcttcccgtttgtgacggaggaaagcaggtagatacaaaaatgtaaatcagccc 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttcttcttcccgcatgtgacggaggaaagcaggtagatacaaaaatgtaaatcagccc 560
Query: 361 tatatcatctagagacaagttaacgtcctgaggctttgaatggatttacttggattgtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatcatctagagacaagttaacgtcctgaggctttgaatggatttacttggattgtgt 620
Query: 421 tctgtgcttgattttgtatcttgctgctgctttttacatggcttttaatgacagatatat 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctgcttgattttgtatcttgctgctgctttttacatggcttttaatgacagatatat 680
Query: 481 aatattaagagctctctgctaagcgtgccttcccggtgggcttagcttcctctgatttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatattaagagctctctgctaagcgtgccttcccggtgggcttagcttcctctgatttcc 740
Query: 541 tatgaaaccactatgctttgaagacacagctgcctggtttttctcttctggaagtctttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgaaaccactatgctttgaagacacagctgcctggtttttctcttctggaagtctttt 800
Query: 601 cttttgtatgcaaatcacttgcaaggatttttttttttttaaagaaagtccagtgtgcag 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 cttttgtatgcaaatcacttgcaaggatttttttttttt-aaagaaagtccagtgtgcag 859
Query: 661 ggctggctggctggctcagctgttagcaggggctgatcttg 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ggctggctggctggctcagctgttagcaggggctgatcttg 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1100
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1090
Effective search space: 753190
Effective search space used: 753190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
