Query= MSMg01no135_j14.b1 MSMg01no135_j14.b1 CHROMAT_FILE:
MSMg01no135_j14.b1 PHD_FILE: MSMg01no135_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:46 2005
(688 letters)
>mm_chr9_39370447_39371534
Length = 1088
Score = 1234 bits (638), Expect = 0.0
Identities = 667/684 (97%), Gaps = 13/684 (1%)
Strand = Plus / Minus
Query: 3 ggaattcgtcagtgatttctcc-aaacgtaaatgatttatgctataattgaagcctgtca 61
||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct: 684 ggaattcgtcagtgatttcacctaaacataaatgatttatgctataattgaagcctgtca 625
Query: 62 ggcacaatgtgtctattggtacttaatgctgtgactgttacagtggtttagatttcaggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggcacaatgtgtctattggtacttaatgctgtgactgttacagtggtttagatttcaggc 565
Query: 122 ccacttcacacaaagaaaatcatgtctgctactgtaaacgtgaagggataattgtaaatc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccacttcacacaaagaaaatcatgtctgctactgtaaacgtgaagggataattgtaaatc 505
Query: 182 acatttgagtgtgagaacaggaaatatagattctatttttagaatttcaaagaatgtaga 241
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 acatttgagtgtgagaacaggaaatatagattccatttttagaatttcaaagaatgtaga 445
Query: 242 attttaagaatatgaaatccaattgagaacaggagaactatgggtaaccttagcctatca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attttaagaatatgaaatccaattgagaacaggagaactatgggtaaccttagcctatca 385
Query: 302 gacccttaaggttctcttccacttagtccttatgctctacttaggcctcaactaagtaga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacccttaaggttctcttccacttagtccttatgctctacttaggcctcaactaagtaga 325
Query: 362 agggggctccccacacagcgtgggtaatctttacttagttcactggctgaaatgtcaacc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agggggctccccacacagcgtgggtaatctttacttagttcactggctgaaatgtcaacc 265
Query: 422 tcattaataacaacatcagactcacattcaggatagtgtttacccaggtatctgaaaatt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcattaataacaacatcagactcacattcaggatagtgtttacccaggtatctgaaaatt 205
Query: 482 ttatgactcagtcaactggcacacacttaactaccctaattaatgctgtatatagtgaaa 541
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ttatgactcagtcaactggcacacacttaactatcctaattaatgctgtatatagtgaaa 145
Query: 542 catttaaattcaattaatcataaaatatttgatacattaagttatttatagtcacatgtt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 catttaaattcaattaatcataaaatatttgatacattaagttatttatagtcacatgtt 85
Query: 602 atatatattgcattatatgtaatatatata------------tatatatataatattaga 649
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 84 atatatattgcattatatgtaatatatatatatatatatatgtatatatataatattaga 25
Query: 650 atgaagcaaaattgggtgagcttt 673
||||||||||||||||||||||||
Sbjct: 24 atgaagcaaaattgggtgagcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_j14.g1 MSMg01no135_j14.g1 CHROMAT_FILE:
MSMg01no135_j14.g1 PHD_FILE: MSMg01no135_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:46 2005
(642 letters)
>mm_chr9_39259727_39260768
Length = 1042
Score = 588 bits (304), Expect = e-172
Identities = 566/672 (84%), Gaps = 55/672 (8%)
Strand = Plus / Plus
Query: 1 tctaagaagctagactctcagcat--ccttcttcctctaattttataggaatttatgca- 57
||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 205 tctaagaagctagactctcag--tggccttcttcctctacttttataggaatttatgcac 262
Query: 58 ---ctctggttagaatttgggcaggtt--catgttgattgagtaaaggttccactttaca 112
||||||| ||||||||||||||| |||| || | ||||||| |||||| |||
Sbjct: 263 tctctctggtgggaatttgggcaggttcacatg--gaatcagtaaagtttccaccccaca 320
Query: 113 aatccttgtacccatttactatttcttcagcagcatata-a-ttcagtt-atctctgtca 169
| |||||| ||||| |||||||| | ||||| | | || || ||||||| ||
Sbjct: 321 a--------acccatgtactacttcttcag--gaatatatactcca-ttaatctctgcca 369
Query: 170 ttccttggttattaacctaaaaatgtttgtgaaatttgtgatagaaaacaaccccatctc 229
| || ||||| |||||| ||||||||||| ||||||||||| |||||||||||||||| |
Sbjct: 370 tcccatggttgttaacccaaaaatgtttgggaaatttgtgagagaaaacaaccccatcac 429
Query: 230 ccaccctcaacacatgactcagctctatttcatcctcagttttgtgactgcaaaatgcca 289
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccaccctcaatacatgactcagctctatttcatcctcagttttgtgactgcaaaatgcca 489
Query: 290 cctgatagcactg--atttcatatgaaccccatgtggccacctataatcctttggtttac 347
| || ||||| | |||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 490 cttgttagca--gcaatttcatatgaaccccatgttgctatctataatcctttggtttac 547
Query: 348 aatgt--------tcactcggatttacagttccttgatttcacaagtacatattattggt 399
||||| || ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 548 aatgtgaccatattctctcagatttacagttccttgatttcagaagtacatattattggt 607
Query: 400 gtagtttgcacatcagctcacacaggcttcatggtctctatatcgcttggtaacaat-gg 458
|||||||| | |||||||||||||||||||||| ||||||||| ||||||||||| | ||
Sbjct: 608 gtagtttgtagatcagctcacacaggcttcatgatctctatatagcttggtaaca-tagg 666
Query: 459 catgatcag-ctaccatttctacat--tcttcttaccccacaaa-ctctctcacttatat 514
|||||| | ||||||||| || | |||||| ||| |||||| | | | ||||||| |
Sbjct: 667 catgatt-gactaccattt-ta--tggtcttctcaccacacaaaacacccccacttatgt 722
Query: 515 taaagttcttgtttattaatttt-aattattattttacttaataatctctcatcctactc 573
|||||||||| |||| | ||||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 723 taaagttcttctttaatgatttttaattattattttacttaataatctttcatccttttc 782
Query: 574 atct-actcattaagttaaagttattatgttaaagaattttt--ggttttatgctttggt 630
| || |||||||||||||| ||| |||||||||| |||||| | |||||| |||||||
Sbjct: 783 a-cttactcattaagttaaggttcttatgttaaa--atttttttgattttatactttggt 839
Query: 631 acatttaacaat 642
||||||||||||
Sbjct: 840 acatttaacaat 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
