TTTTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGATCC
GCGGAATTCTCTGGTAACTTTTTTCGGTCACTTATATATACTATCACATC
ATCCACAAATAGCAATACATTGACTTCTTTTCCTATTTTTATCACCTTGA
TCTCCTACCTTATTGCTCTTGCCAGAACTTAAAGTACTATATTGAATAGA
TAGGGAGAGAGTGGGCAGCCTTGTTTTGTCCTTGATTTTAGTGGAAAAGC
TTTAAGTTTCTCTTCATTCAATTTGATGTTGGATCTTGGCTTGTGCTAAA
TTACCTTTAGTGTGTTTAAGTATGTACCTTGTATCCATGATCTTTTCAAG
ATTTGTATCATGAATAAGTTTTGTATTTTGACAAATGCTTTTTCAGCATC
TAGTGAGATGACCATGCGCCTTTTTTTCTTTCAGTTTGTTTATGTAGTGG
ATTATTTTGATGATCTTTTTTTTATTATACAACCCTGCATCAATGGAATG
ATGCCTACTTGATCATTGGATTTAGTTTATGACTTTGTTATTGGATATTG
TCTTTATTTACAATTTAAATCTATCCACTTTCCTGGTTCCCCCAATGGAA
ACTCCCAGTCCCATCCCACCTCCCCTTGCTTCCATGAGGGTGTTTCCCCA
CCCACACACTCCCACTTTCTTGCACTCACATTCCATTATACTATGGCATC
CAGCCTTCAGAGGACCTCTTTT

NNNNCGATGCAGTGGTAGCCTGGCGGCGCCTGTTCACAAATTTAGGTGAC
CTATAGAATTCCCGCGGAATTCAGGGTTGCCTAGTTTTCTATATTGAACA
ACACTGGAGGAGCTAATACATATGTGCTTAAAAAAAAGTGATATGCTCTA
GTTTGAGCAGAAAGGTACATTTGTGCTTGTTAGAACTGAAACCTTTGTTT
GGACTTTGTTTATTTTGTCCTCAGTGTTGGGGATGAGGAGTCTCAGGAGT
CATGCTGTTTACTGGTTGATTCTTTGTAAAGTTCTTTTTGTTTGTACTTG
GTTGAATTCAGTCCTGAGTTTGATTATTTCCTGTCCTCTACTCCTCTTGG
GTGAATTTACTTCCTTTTGTTCTAGAACTTTTAGGTGTGTTGTCAAACTG
CTAGTGTGTGCTCTCTCTAGTTTCTTTTTGGCAGCACTCATAGCTATGCA
TTTTCCACTTAGGACTACTTTCAATGTGTCCCATAAGTTTGGGTATGTTG
TGGCTTCATTTTCATTATACTCTAAAAAGTCTTTAATTTCTTTATTTCTT
CCTTGACCAAGTTATCACAGAGTAGAGTTTTGTTTGGCTTCCATGTCAGT
GTTGGCTTTCTATTATTTATGTTGTTATTGAAGATCAGCCTTAGTCTGTG
GTGATCTGATAGGACACATGGGATTATTATTTTTGTATCTGTTGAGGCCT
GTTTTGTGACCG

Query= MSMg01no136_d19.g1 MSMg01no136_d19.g1 CHROMAT_FILE:
MSMg01no136_d19.g1 PHD_FILE: MSMg01no136_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:33 2005
         (661 letters)



>mm_chr9_5479452_5480513
          Length = 1062

 Score = 1191 bits (616), Expect = 0.0
 Identities = 640/648 (98%), Gaps = 1/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattcagggttgcctagttttctatattgaacaacactggaggagctaatacatatgt 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 215 ggaattcagggttgcctagttttctatattgaacaacactggaggagctaatacacatgt 274

                                                                       
Query: 75  gcttaaaaaaaa-gtgatatgctctagtttgagcagaaaggtacatttgtgcttgttaga 133
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcttaaaaaaaaagtgatatgctctagtttgagcagaaaggtacatttgtgcttgttaga 334

                                                                       
Query: 134 actgaaacctttgtttggactttgtttattttgtcctcagtgttggggatgaggagtctc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actgaaacctttgtttggactttgtttattttgtcctcagtgttggggatgaggagtctc 394

                                                                       
Query: 194 aggagtcatgctgtttactggttgattctttgtaaagttctttttgtttgtacttggttg 253
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 395 aggagtcatgctgtttactggttgattctttgtatagttctttttgtttctacttggttg 454

                                                                       
Query: 254 aattcagtcctgagtttgattatttcctgtcctctactcctcttgggtgaatttacttcc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aattcagtcctgagtttgattatttcctgtcctctactcctcttgggtgaatttacttcc 514

                                                                       
Query: 314 ttttgttctagaacttttaggtgtgttgtcaaactgctagtgtgtgctctctctagtttc 373
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 515 ttttgttctagaacttttaggtgtgttgtcaaactgctagtgtgtgttctcgctagtttc 574

                                                                       
Query: 374 tttttggcagcactcatagctatgcattttccacttaggactactttcaatgtgtcccat 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttttggcagcactcatagctatgcattttccacttaggactactttcaatgtgtcccat 634

                                                                       
Query: 434 aagtttgggtatgttgtggcttcattttcattatactctaaaaagtctttaatttcttta 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aagtttgggtatgttgtggcttcattttcattatactctaaaaagtctttaatttcttta 694

                                                                       
Query: 494 tttcttccttgaccaagttatcacagagtagagttttgtttggcttccatgtcagtgttg 553
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 695 tttcttccttgaccaagttatcactgagtagaattttgtttggcttccatgtcagtgttg 754

                                                                       
Query: 554 gctttctattatttatgttgttattgaagatcagccttagtctgtggtgatctgatagga 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gctttctattatttatgttgttattgaagatcagccttagtctgtggtgatctgatagga 814

                                                           
Query: 614 cacatgggattattatttttgtatctgttgaggcctgttttgtgaccg 661
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 cacatgggattattatttttgtatctgttgaggcctgttttgtgaccg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)