Query= MSMg01no136_f22.b1 MSMg01no136_f22.b1 CHROMAT_FILE:
MSMg01no136_f22.b1 PHD_FILE: MSMg01no136_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:44 2005
(652 letters)
>mm_chr9_22310355_22311406
Length = 1052
Score = 1087 bits (562), Expect = 0.0
Identities = 595/606 (98%)
Strand = Plus / Minus
Query: 43 atacactttttaaagatgtatttttaactaagttccaacatctcagctcagaaactaaag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 atacactttttaaagatgtatttttaactaagttccaacatctcagctcagaaactaaag 993
Query: 103 cccatcaggaaataatataagtcagatgtggtagtgcacacctgtaacccaggaagctga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 cccatcaggaaataatataagtcagatgtggtagtgcacacctgtaacccaggaagctga 933
Query: 163 ggcagaagaatcccaagtttgagcacgcgcgcacacacacacacacacacacacacacac 222
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 932 ggcagaagaatcccaagtttgagcgcgcgcgcgcacacacacacacacacacacacacac 873
Query: 223 acacacacacacccttggctacattattcagaggaaggaaagtgggggaaaagaatagaa 282
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 872 acacacacacacccttggctacattattcagaggaaggaaagtggggaaaaagaatagaa 813
Query: 283 agtatagaggagcctttagttcatcaagacattgatgttacacatacgcttaaaggcaca 342
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agaatagaggaacctttagttcatcaagacattgatgttacacatacgcttaaaggcaca 753
Query: 343 gtatcccaccctagaaagtccacccagcaacctctgactgtgtaggcctactcgttactt 402
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 752 gtatccaacattagaaagtccacccagcaacctctgactgtgtaggcctacttgttactt 693
Query: 403 caaagactgaactgacgttaagtctgctttcagaagcatggcgactacaaaagaacttca 462
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caaagactgaactgacattaagtctgctttcagaagcatggcgactacaaaagaacttca 633
Query: 463 tgaaagcatagcaaggttctgggttcaacccgaaataccacacaaataagaaagggcgga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgaaagcatagcaaggttctgggttcaacccgaaataccacacaaataagaaagggcgga 573
Query: 523 aaggaaagcgctcggagacagggagtgggaaagggcggaaaggaaagagctcacagacag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaggaaagcgctcggagacagggagtgggaaagggcggaaaggaaagagctcacagacag 513
Query: 583 gaagtgggcaaagaaggtcagaggcagccgacattgtcatctgccaacacccaccattct 642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 512 gaagtgggcaaagaaggtcagaggcagccgacattgtcatctgccaacacccaccactct 453
Query: 643 cttcag 648
||||||
Sbjct: 452 cttcag 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f22.g1 MSMg01no136_f22.g1 CHROMAT_FILE:
MSMg01no136_f22.g1 PHD_FILE: MSMg01no136_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:44 2005
(582 letters)
>mm_chr9_22148375_22149356
Length = 982
Score = 1029 bits (532), Expect = 0.0
Identities = 572/592 (96%), Gaps = 14/592 (2%)
Strand = Plus / Plus
Query: 1 tcatctttcttaggctaaca-gtgagtctcttgttgctgggcagcccttcctatcacagc 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcatctttcttaggctaacaagtgagtctcttgttgctgggcagcccttcctatcacagc 254
Query: 60 tccatataggtcacaaataggcagccattacttttcagtatctcatgcctttagcaggtt 119
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 255 tccatataggtcacaaataggcagctattacttttcagtatctcatgcctttagcaggtt 314
Query: 120 tttacttgttaaaagattcagcaaagtccacaagctat----tacttttcctaaacaaca 175
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 315 tttacttgttaaaagattcagcaaagtccacaagctatctattacttttcctaaacaaca 374
Query: 176 ggatttatgttacaca-gtctgaccaagcacaggctaatgtaagtgtcctggctgtgttt 234
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggatttatgttacacaagtctgaccaagcacaggctaatgtaagtgtcctggctgtgttt 434
Query: 235 atgggaggtataagccatgttcaacagctttcggtatctgaagtgaattttcaacttata 294
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgggagggataagccatgttcaacagctttcggtatctgaagtgaattttcaacttata 494
Query: 295 atgagatgatcagaatatgaactcatttcaagttaagaagcatccacccacaacacacac 354
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 495 atgagatgatcagaatatgaactcatttcaagttaagaagcatctatttacaacacacac 554
Query: 355 aaacacactgctaaaagagggattcagaaccaatggactcaaaatttccccatgactctc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaacacactgctaaaagagggattcagaaccaatggactcaaaatttccccatgactctc 614
Query: 415 tggctggtggaggcaaaggctaatggctgacaataagcgcactgcctcctcaaaggggat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tggctggtggaggcaaaggctaatggctgacaataagcgcactgcctcctcaaaggggat 674
Query: 475 ttcagaaaatttatctcacaaattaacatacacatatttctaggtacatttcttttttat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttcagaaaatttatctcacaaattaacatacacatatttctaggtacatttcttttttat 734
Query: 535 aatctctgccacatacacaca--------ggctatctacacacacacacaca 578
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 735 aatctctgccacatacacacacacacacaggctatctacacacacacacaca 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
