BAC Information

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BAC

Clone NameMSMg01-136H14
Chromosome9 (Build37)
Map Location 65,024,868 - 65,025,504
singlet/doubletsinglet
Overlap genePunc
Upstream geneRpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope
Downstream geneParp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136H14.T7 (MSMg01no136_h14.b1)MSMg01-136H14.TJ (MSMg01no136_h14.g1)
ACCAG342663AG342664
length713715
length of high quality
(start - end)		641 (47 - 687)597 (78 - 674)
definitionCHROMAT_FILE: MSMg01no136_h14.b1 PHD_FILE: MSMg01no136_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:52 2005CHROMAT_FILE: MSMg01no136_h14.g1 PHD_FILE: MSMg01no136_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATAATTGCGGCGCTAATACGACTCCTTTCGAAGAGGATCCGC
GGAATTCAGTCTGACCAATGTTGTAAATGTATTTAAAACATTATGGGTTT
TTTCGTTGCGTTTTTGGCCTCCTTTTGGTAAGTCCTATCTATCTCACTTA
GGAGCTTTGTAGTGACCACGTCTTATCTCAGTGTCTTCTATCCAGGTATC
TTAATGATTATGTCACCTCGGGTTGGAGTGTGCCCACGCGTGATGGGGAG
GGCTGAAGGAAGAGCTGCTATGTCCCCTAAGCTACTGTCCTGCCTCAAGA
AGACACTGCTCCTCAGAGGGTGACCCCTCAGTTCTCTCCATCTGCACCTC
CACTTTATCCATCTCCCCTTTTCTGTCTCCCCAGCTATGTCCGACTTCCA
CGTACACCCCCAGGCCGTCACGGGTGAGGAGGGTGGTGTGGCCCGCTTCC
AGTGCCAAATCCATGGGCTTCCCAAGCCCCTGATCACATGGGAGAAGAAC
AGAGTTCCCATTGACACGGACGATGAGAGGTGAGCCTCTTGTGGGAAGGA
CAGGGGATAACTGGGAAGCTGACTTGGGATAGACTACAGGCTGGGACAGT
GCTATTATGTAAGCTGCAGTCAGAATCATGGGTCCGAGTGGCTTACTAGG
CCCAGATTCTAGGCTCATGAGATTGTGTAAGAGTATTGTGTGTGTTGTTA
TCAAGACTAGGAG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGCTGACACATGAGAGGCT
GTTTAGCTAAGAACAGACATGTGGTGTTTTTCTGGAAGCTGTCTTGTGAT
GTTTTGCTGGAGTGACTGCTTGAGAGAATGTGTGATGTTTAGAAGGCATA
TGAATATAACCCCACCATGAGTGAGAACATGCTCTTGCATTGGTTCACCT
TGCAACACCTAGCAGTCTTTGGTCTTTGCTGATGATGCTCTTGCATTGCT
AAGTCTTGTAATGCTTTGTTATGTCTTTGATGATCTTTGCTTGCCATGAC
TTCAGAAAGAGAAACACACCAGAGAATGTCTCATAGTATTCCAGCTGATT
CTTGCTGATTCAGCAGCCCCTCGTGGTTTCTTCTGGATTGGGCTACTGCT
ACTGATTCATGTTTGGTGTTTTGGACTTGGACTGCTGATATCTTTACAAT
AAAGATTAGAGTCATCCCAAAGAACTTCTAAACATTCCAGAAATCTGCCT
GCCTCTGCCTCCCAAGTGCTGGGATTAAAGATGTGCGCCACCACACCCGG
CAAACATTCTGTTTTCTATTAACTTTTCCCCCTACCTCTGGTATGTGGGC
TAGAAGGGAGGTTAAAGCATTTAAGAACCCTTATTAAAGTAGGTTTTGGA
CATTTTATCCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_h14.b1 MSMg01no136_h14.b1 CHROMAT_FILE:
MSMg01no136_h14.b1 PHD_FILE: MSMg01no136_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:52 2005
         (641 letters)



>mm_chr9_65024663_65025704
          Length = 1042

 Score = 1216 bits (629), Expect = 0.0
 Identities = 635/637 (99%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagtctgac-caatgttgtaaatgtatttaaaacattatgggttttttcgttgcg 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagtctgatacaatgttgtaaatgtatttaaaacattatgggttttttcgttgcg 265

                                                                       
Query: 65  tttttggcctccttttggtaagtcctatctatctcacttaggagctttgtagtgaccacg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttttggcctccttttggtaagtcctatctatctcacttaggagctttgtagtgaccacg 325

                                                                       
Query: 125 tcttatctcagtgtcttctatccaggtatcttaatgattatgtcacctcgggttggagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcttatctcagtgtcttctatccaggtatcttaatgattatgtcacctcgggttggagtg 385

                                                                       
Query: 185 tgcccacgcgtgatggggagggctgaaggaagagctgctatgtcccctaagctactgtcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgcccacgcgtgatggggagggctgaaggaagagctgctatgtcccctaagctactgtcc 445

                                                                       
Query: 245 tgcctcaagaagacactgctcctcagagggtgacccctcagttctctccatctgcacctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcctcaagaagacactgctcctcagagggtgacccctcagttctctccatctgcacctc 505

                                                                       
Query: 305 cactttatccatctccccttttctgtctccccagctatgtccgacttccacgtacacccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cactttatccatctccccttttctgtctccccagctatgtccgacttccacgtacacccc 565

                                                                       
Query: 365 caggccgtcacgggtgaggagggtggtgtggcccgcttccagtgccaaatccatgggctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caggccgtcacgggtgaggagggtggtgtggcccgcttccagtgccaaatccatgggctt 625

                                                                       
Query: 425 cccaagcccctgatcacatgggagaagaacagagttcccattgacacggacgatgagagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cccaagcccctgatcacatgggagaagaacagagttcccattgacacggacgatgagagg 685

                                                                       
Query: 485 tgagcctcttgtgggaaggacaggggataactgggaagctgacttgggatagactacagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tgagcctcttgtgggaaggacaggggataactgggaagctgacttgggatagactacagg 745

                                                                       
Query: 545 ctgggacagtgctattatgtaagctgcagtcagaatcatgggtccgagtggcttactagg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctgggacagtgctattatgtaagctgcagtcagaatcatgggtccgagtggcttactagg 805

                                                
Query: 605 cccagattctaggctcatgagattgtgtaagagtatt 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 806 cccagattctaggctcatgagattgtgtaagagtatt 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space:   651192
Effective search space used:   651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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