BAC Information

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BAC

Clone NameMSMg01-137D22
Chromosome9 (Build37)
Map Location 19,552,354 - 19,552,729
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1
Downstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137D22.T7 (MSMg01no137_d22.b1)MSMg01-137D22.TJ (MSMg01no137_d22.g1)
ACCAG343229AG343230
length744735
length of high quality
(start - end)
652 (41 - 692)400 (64 - 463)
definitionCHROMAT_FILE: MSMg01no137_d22.b1 PHD_FILE: MSMg01no137_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:52 2005CHROMAT_FILE: MSMg01no137_d22.g1 PHD_FILE: MSMg01no137_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAAACCGCGGAATTCTA
GGCCTTTATTCCCAGGCTTGGGAATGTGGCCTTTGTAAAGGTATGCTAAT
CATAAAAGAGATAGCGACATTCCTCTACCCACCCACTTCCTGGGTTCAAA
GAGTGCTCATTCAAAGAAAGTCACCCTGGCCATTACCAGAACCTGCAATG
CAAATGTGCTATTGTTAGGGGCTCTTAGAAGCTGTCTTGAGAGTTAACAA
TTACCAGGTATTCCTTGTGACTCTTGTAACTTTACACTTCCTTGTGACTC
TTAACTGGTATCTTTGGTATCTTCCAACAAAGCCCTCCCCACTTCCTTGA
GTTTCGGTTTCTTCCTTTAAATACCCCCTTACCCAGCTACTCGGGGCGCC
ACAGTCCTCTACCCCTGCGTGGTGTATGACCGTGGGCCCGAGAGCGCTCT
TGAATAAAAATCCTCTTGCAATTTGCAACAAGACCGTTTTCTCGTTGGTG
ATTTTGGGGTGTCGCCTCTCCTGAGTCAGAACGTGGGGGAGTCCTCACGT
TGTGGGTCTTTCATTTGGTGCATTGGCTGGGAAACGCGACCACCCCTCAC
ACCCGAGAACCGACTTGGAGGTATGGGGATCCCCTCTTGTGTGTGTGCCG
GCCGGTGTATCTGTTTTGAGTGTCTGTTTTCTGAAACGAACATTGGAACA
TGTGCTTGTTATGTTGGGTTGCTCGTGTCTTGTNCTACGCCTCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAGAAATGTATACAATCTCAGACAAGACAAAATCCAT
CATGGAATGGTGAGAGGTAGGAATGAAATCTCATCTCACCAATAGCAGCT
GTTAGTATTCATTGCTGTGGAGAGGGAGTGTCAAGGATCAAGTTCCATTT
GTGTATTTTAATAGCACGAGTTGCTGACAATTTAAGAATTAGGTGGCTGT
ATATACATGCATGAGTCCTCAATTTTATTACATTAAAAATGACTTTGATT
TTTTTCATGAGTATCATCCTGTTTTTATTACTTTAGACCTTTAATTTAAG
TTGGAATCTAGGATAGTGATACTACCAGCAGTTTTTTGTTTGTTTGTTTT
TGTTTGATTTGTTTTTGGTTTTTTTAAGGGGTTATTTTTTTTTTTTGACN
CTTCAAATTACCAACTTATCACCTATAAAACTTGCCTCGCTATACCCCAC
TGATGCTACTCATTTACTCCTACTGACCAACATATTATCTCCTGTGTTGG
TATCACCCCCTCATTCTTGCTGCCCCTATGAATATGCTTTCCCCCGAATA
AAGGCTTGCATCTCTTTCTCTCGTTTGTGTCCAGCTCCCAGAGATATCTT
GTACATGATATCGTGCTCAGCTGTTTTATTTTTTGAACGATAGTTCCCAC
CTGATTTGGTAATTACCTGCCCGCTCCTTCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_d22.g1 MSMg01no137_d22.g1 CHROMAT_FILE:
MSMg01no137_d22.g1 PHD_FILE: MSMg01no137_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:52 2005
         (400 letters)



>mm_chr9_19552354_19553153
          Length = 800

 Score =  727 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaatgtatacaatctcagacaagacaaaatccatcatggaatggtgagaggtaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagaaatgtatacaatctcagacaagacaaaatccatcatggaatggtgagaggtaggaa 317

                                                                       
Query: 61  tgaaatctcatctcaccaatagcagctgttagtattcattgctgtggagagggagtgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgaaatctcatctcaccaatagcagctgttagtattcattgctgtggagagggagtgtca 257

                                                                       
Query: 121 aggatcaagttccatttgtgtattttaatagcacgagttgctgacaatttaagaattagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggatcaagttccatttgtgtattttaatagcacgagttgctgacaatttaagaattagg 197

                                                                       
Query: 181 tggctgtatatacatgcatgagtcctcaattttattacattaaaaatgactttgattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tggctgtatatacatgcatgagtcctcaattttattacattaaaaatgactttgattttt 137

                                                                       
Query: 241 ttcatgagtatcatcctgtttttattactttagacctttaatttaagttggaatctagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttcatgagtatcatcctgtttttattactttagacctttaatttaagttggaatctagga 77

                                                                       
Query: 301 tagtgatactaccagcagttttttgtttgtttgtttttgtttgatttgtttttggttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tagtgatactaccagcagttttttgtttgtttgtttttgtttgatttgtttttggttttt 17

                           
Query: 361 ttaaggggttattttt 376
           ||||||||||||||||
Sbjct: 16  ttaaggggttattttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)