BAC Information

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BAC

Clone NameMSMg01-137H05
Chromosome9 (Build37)
Map Location 91,804,729 - 91,805,018
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137H05.T7 (MSMg01no137_h05.b1)MSMg01-137H05.TJ (MSMg01no137_h05.g1)
ACCAG343375AG343376
length729724
length of high quality
(start - end)
290 (72 - 361)120 (158 - 277)
definitionCHROMAT_FILE: MSMg01no137_h05.b1 PHD_FILE: MSMg01no137_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:08 2005CHROMAT_FILE: MSMg01no137_h05.g1 PHD_FILE: MSMg01no137_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGAGGAGGGGGCGG
AATTCTTTTCAATTCCCTGAATTGACTGTGTAGGCTTTTAATAACAAAAT
CCATTTAAATAATCTACATTGGAAGACATTAAATTTTTCTACTAGTTTGT
GTTTTGTGTGTGTAACAAATCTTCAGAGGACCATATGGTCTAAAGCTATC
CTACATGACAGCATATATTTGCGGGGGAAAATATGTCTTTGTTTTCATTC
CTTCTTTGTACAAAGATGTTTGCCAATCTAGGGACATTTTCCTTCCCAGT
CTTCTTCATGACAAGGAGACATGTTTTGTTTCTTAGGATGCGTCGGTAAA
CTGTTCACCTATTAGAGCTTGACAGTTGGAAACTGATACCTGTAGTGACT
TAAAGAGGGAAAGTATCCCTGATATTTTGTCCCTCTCCTTTCCATTTGCA
GTTACTCTTCCCTTTCGCTTTAGTACTGTGATTAACACGGCACATCTGAG
ACTTCCCCCTATTTATAGGTTTTCTGATCTGCATTTTCTCCACAGGCTTC
CATGACTGACTATCCATTGTCTGATCCGAACGATGCTATCTTTATTATCC
TGCCATTATGATGCCCTGATGGCCATATACGACCAGAATGCTCCGTAATT
CCTGCTGTCTTGTTCGTCTTGAAATACCGGCTCTTTACAATGCCTTGTAC
CTCCCTGTTTTCTCCACCTCTGTCCCCGC
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAGTAGGGAGGTGA
ACTATAGAAGGTTTCCAGAAATTCCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGTTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCCGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATTTTTTTTCATAAGATAAATTGGTCCGAAGC
TCTCTATCTTTGTTGGGCCTTTCTGTGGTTTATTTACCATAGTTATATTG
TCTTCTCATATTGAGTTGGTTATAGTATCCTCTACTCCTATTTTGCGATA
TAGTTTGCGCAGAATTGTAATTAGATCTTCTTTGAAGGTCCGGTATAACT
CTGCCCTATACTTTTCTGCTCCCGCGTTTCCCCTTGTTCGTTATACTCTT
ATTACCTGCTTCCATTTCTTTCCGTGATATGGTACTGTTTACACTGGCAA
CTTGATCCTGATTCCCCTTTGCCACTTGGCCTCTGCCAAGAATTTTGCAC
TTTTCCTTCAGGTTCTTTAGCTCTGTTGAATCACGTTTTTCCGACCACTC
CCTTTTTCCGCCCTTGTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_h05.b1 MSMg01no137_h05.b1 CHROMAT_FILE:
MSMg01no137_h05.b1 PHD_FILE: MSMg01no137_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:08 2005
         (290 letters)



>mm_chr9_91804529_91805218
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgactgtgtaggcttttaataacaaaatccatttaaataatctacattggaagacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttgactgtgtaggcttttaataacaaaatccatttaaataatctacattggaagacatta 431

                                                                       
Query: 61  aatttttctactagtttgtgttttgtgtgtgtaacaaatcttcagaggaccatatggtct 120
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aatttttctactcgtttgtattttgtgtgtgtaacaaatcttcagaggaccatatggtct 371

                                                                       
Query: 121 aaagctatcctacatgacagcatatatttgcgggggaaaatatgtctttgttttcattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaagctatcctacatgacagcatatatttgcgggggaaaatatgtctttgttttcattcc 311

                                                                       
Query: 181 ttctttgtacaaagatgtttgccaatctagggacattttccttcccagtcttcttcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttctttgtacaaagatgtttgccaatctagggacattttccttcccagtcttcttcatga 251

                                                             
Query: 241 caaggagacatgttttgtttcttaggatgcgtcggtaaactgttcaccta 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 250 caaggagacatgtcttgtttcttaggatgcgtcggtaaactgttcaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)