Query= MSMg01no137_i19.b1 MSMg01no137_i19.b1 CHROMAT_FILE:
MSMg01no137_i19.b1 PHD_FILE: MSMg01no137_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:16 2005
(241 letters)
>mm_chr9_28234498_28235139
Length = 642
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 1 aataaaaacggacttcttcatcagcatagatgagttaagtttttgaaaatcttaacaaga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aataaaaacggacttcttcattagcatagatgagttaagtttttgaaaatcttaacaaga 383
Query: 61 agtataacaggaaaacagcgctgtacacataagtacagatgtacgggtggatgaaacagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtataacaggaaaacagcgctgtacacataagtacagatgtacgggtggatgaaacagt 323
Query: 121 atcc-tgctttccacacacagatatgtgcacaaggcaattgggcatctagaataactatt 179
|||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 322 atccttgctttccacacacagatatgtgcacgaggcgattgggcatctagaataactatt 263
Query: 180 tacagagaaatgttgctgctttgaaaagatgacttgcttgctgccttggtgcaatgtggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacagagaaatgttgctgctttgaaaagatgacttgcttgctgccttggtgcaatgtggt 203
Query: 240 gg 241
||
Sbjct: 202 gg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no137_i19.g1 MSMg01no137_i19.g1 CHROMAT_FILE:
MSMg01no137_i19.g1 PHD_FILE: MSMg01no137_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:16 2005
(528 letters)
>mm_chr9_28081794_28082716
Length = 923
Score = 994 bits (514), Expect = 0.0
Identities = 521/526 (99%), Gaps = 5/526 (0%)
Strand = Plus / Plus
Query: 1 ttttacttttaaattgcactttatctgtatggaaggagggttgcgtgttactttgactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttacttttaaattgcactttatctgtatggaaggagggttgcgtgttactttgactat 260
Query: 61 gtggacagcaacatggaggagttactctttccttttactatgtatgccctgggatactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggacagcaacatggaggagttactctttccttttactatgtatgccctgggatactga 320
Query: 121 acttagtaggccttcagatttgacagcaagcacatttaaccactgagtcttcttgctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttagtaggccttcagatttgacagcaagcacatttaaccactgagtcttcttgctcta 380
Query: 181 aatggaattcttttgttttgctgttgttgttttttgttttgttttgtttttaatttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggaattcttttgttttgctgttgttgttttttgttttgttttgtttttaatttattt 440
Query: 241 tatatatgtgaatacattgtcactgtcttcagatagaccagaagagggcatcagatccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatatgtgaatacattgtcactgtcttcagatagaccagaagagggcatcagatccca 500
Query: 301 ttacatagagatagttgtgagctaccacgtgattgctgggaattgaactcaggacttctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacatagagatagttgtgagctaccacgtgattgctgggaattgaactcaggacttctg 560
Query: 361 gaagagcagtcagtgctcttaaactgctaaactatctctctacccctctgaatgtcctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagagcagtcagtgctcttaaactgctaaactatctctctacccctctgaatgtcctta 620
Query: 421 cttaagacatttttagggtgcgaattatggaatctaagcttgaaataaatatcttaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 cttaagacatttttagggtgcgaattatggaatctaagcttgaaataaata-----agga 675
Query: 481 gagaaaagcaacaagaaagaaagtttcatgtgtttctaataaccca 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagaaaagcaacaagaaagaaagtttcatgtgtttctaataaccca 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 923
Length adjustment: 10
Effective length of query: 518
Effective length of database: 913
Effective search space: 472934
Effective search space used: 472934
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
