Query= MSMg01no137_n24.b1 MSMg01no137_n24.b1 CHROMAT_FILE:
MSMg01no137_n24.b1 PHD_FILE: MSMg01no137_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:43 2005
(664 letters)
>mm_chr9_15160756_15161819
Length = 1064
Score = 1222 bits (632), Expect = 0.0
Identities = 655/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 3 gaattctttatcac--tttcgtggtcaggacaagtatgatcttattcatcacctcatctc 60
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctttatcacaatt--gtggtcaggacaagtatgatcttattcatcacctcatctc 260
Query: 61 tttcgtctaaaaaactgtcttgcatcttataaataattcagggtggactgaacgagaaag 120
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttttgtctaaaaaactgtcttgcatcttataaataattcagcgtggactgaacgagaaag 320
Query: 121 tgactaatccatatacagtactacatggcagacccagtcatgacttcatcgaagaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactaatccatatacagtactacatggcagacccagtcatgacttcatcgaagaacaaa 380
Query: 181 tgtcaaacagtagtaattgcttgaattgaaaaccttttccgcactcgggaggcagaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcaaacagtagtaattgcttgaattgaaaaccttttccgcactcgggaggcagaggca 440
Query: 241 ggtggatttctgagtttgaggccagcctggtctacatagtgagttccaggacagccaggg 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ggtggatttctgagtttgaggccagcctggtctacagagtgagttccaggacagccaggg 500
Query: 301 ctacacagagaaaccctgtctcggaaaacaaaacaaaacaaaaaaagccttttccaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacacagagaaaccctgtctcggaaaacaaaacaaaacaaaaaaagccttttccaatac 560
Query: 361 actccactgaattcttaagaaaatactcctgaggatggttgaggctccaagagaggaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actccactgaattcttaagaaaatactcctgaggatggttgaggctccaagagaggaaca 620
Query: 421 ttttaagttgtcctccataggagacaagtattcctcctgcatctattaagtagaatcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttaagttgtcctccataggagacaagtattcctcctgcatctattaagtagaatcctg 680
Query: 481 ttacctggcttgttcactagtcatttctacccacgtggactcttcaagttctgtgtttta 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 ttacctggcttgttcactagtcatttctacccatgtggactcttcaagttctgtgtttta 740
Query: 541 agtgtccaataatgatggacacagtagggcttatcttgatagatttccttctaaggatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtgtccaataatgatggacacagtagggcttatcttgatagatttccttctaaggatta 800
Query: 601 ggcagtatctgacacacagtaatcaaaaaattaatagatgtggatgcaagagccattcat 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcagtatctgacacacagtaaccaaaaaattaatagatgtggatgcaagagccattcat 860
Query: 661 tagc 664
||||
Sbjct: 861 tagc 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_n24.g1 MSMg01no137_n24.g1 CHROMAT_FILE:
MSMg01no137_n24.g1 PHD_FILE: MSMg01no137_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:43 2005
(636 letters)
>mm_chr9_15322504_15323539
Length = 1036
Score = 721 bits (373), Expect = 0.0
Identities = 388/393 (98%)
Strand = Plus / Minus
Query: 244 ggcttcatggagagctggaggctagcctgggcttcagggagagctggaggctagcctggg 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ggcttcagggagagctggaggctagcctgggcttcagggagagctggaggctagcctggg 977
Query: 304 cttcagggagagctggaggctagcctgggcttcagggagagttggagactagcctgggct 363
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 976 cttcagggagagctggaggctagcctgggcttcagggagagctggaggctagcctgggct 917
Query: 364 tcagggagagctggaggctagcctgggcttcagggagagctggagactagcctgggcttc 423
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 916 tcagggagagctggagactagcctgggctttagggagagctggagactagcctgggcttc 857
Query: 424 agagtgacactggttcaaaaccaaagccagacagaggataggtgggtagatcagtatgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 agagtgacactggttcaaaaccaaagccagacagaggataggtgggtagatcagtatgca 797
Query: 484 catagacagaggcagaaagacagacataaccaaaggagacaaatgggaaggacagacagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 catagacagaggcagaaagacagacataaccaaaggagacaaatgggaaggacagacagt 737
Query: 544 gaggagaggacactggcctctgtggcagagcttgactgtgggctgcagccagtctccaca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaggagaggacactggcctctgtggcagagcttgactgtgggctgcagccagtctccaca 677
Query: 604 cactgcaccccgcttttggagaagggaaaggag 636
|||||||||||||||||||||||||||||||||
Sbjct: 676 cactgcaccccgcttttggagaagggaaaggag 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
