Query= MSMg01no138_n22.b1 MSMg01no138_n22.b1 CHROMAT_FILE:
MSMg01no138_n22.b1 PHD_FILE: MSMg01no138_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:03 2005
(544 letters)
>mm_chr9_68760351_68761294
Length = 944
Score = 951 bits (492), Expect = 0.0
Identities = 531/544 (97%), Gaps = 3/544 (0%)
Strand = Plus / Minus
Query: 2 gaattctatcctgatttc-catgcttccaagagctattttttcccctcccaagctccact 60
|||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattctatcctgagttctc-tgcttccaagagctattttttcccctcccaagctccact 517
Query: 61 ttcttccctttccttcttcctcttccttccctcccacctttctctctgtaaacattcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 516 ttcttccctttccttcttcctcttccttccctcccacctttctctctgtaaacattcatc 457
Query: 121 atgtcctcctccttcccacctcaaaacctggccaaccgccctatctcacagctctggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atgtcctcctccttcccacctcaaaacctggccaaccgccctatctcacagctctggttt 397
Query: 181 aactactcactccccagcaaggctaatccagccacaagacggcatttaataaatgtgtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aactactcactccccagcaaggctaatccagccacaagacggcatttaataaatgtgtaa 337
Query: 241 ataatgcagacacatagactcctacataggcattgttttgtcaggactgctgtctcagat 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 336 ataatgcagacacatagactcctacataggcattgttttgccaggactgctgtctcagat 277
Query: 301 taccccagactgggtgggttaagcatatgaaatgtatcatctcttagctctgaaaactgg 360
|||||||| ||||| |||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct: 276 taccccagcctgggcgggttaaggataagaaatgtatcgtctcttagctctgaaaactgg 217
Query: 361 aagtcagacatgagctccccctcacatcggaaacttgggaaggaagggcctggtgggcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 216 aagtcagacatgagctccccctcacatcggaaacttgggaaggaagggcctggcgggcgg 157
Query: 421 ggctggctcattgtcttctaacaatgtctgtgctctgagcatatctgtgttcttattctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ggctggctcattgtcttctaacaatgtctgtgctctgagcatatctgtgttcttattctc 97
Query: 481 ttttcttacagggccatcagtcacaccccatgtcacttgcttcattttaatttcactacc 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 96 ttttcttacagggccatcagtcaca-tccatgtcacttgcttcattttaatttcactacc 38
Query: 541 tctt 544
||||
Sbjct: 37 tctt 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_n22.g1 MSMg01no138_n22.g1 CHROMAT_FILE:
MSMg01no138_n22.g1 PHD_FILE: MSMg01no138_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:03 2005
(237 letters)
>mm_chr9_68603208_68603844
Length = 637
Score = 408 bits (211), Expect = e-118
Identities = 226/231 (97%)
Strand = Plus / Plus
Query: 1 tctctcccagtgtccctgagttatcagccataatcagcggccttctaggtctgtgctcat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 201 tctctcccagtgtccctgagttatcagccataatcagcggcctactaggtctgtgttcat 260
Query: 61 ggtatctgtaattatattcatttgtatggatgcccagggaattccactgccaggcccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 261 ggtatctgtaattatattcatttgtatggatgcccagggaattccactgactggcccctt 320
Query: 121 aagtgcttaactgcaaacaagaacatgcttgaattacagcatcatttggggtcttgcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgcttaactgcaaacaagaacatgcttgaattacagcatcatttggggtcttgcaca 380
Query: 181 tttcaagggactgatcttaagtttatatactgtttggctgtgtgcgtgtgt 231
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tttcaagggactgatcttaagtttatatactgtttggctgtgtgtgtgtgt 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
