Query= MSMg01no139_b13.b1 MSMg01no139_b13.b1 CHROMAT_FILE:
MSMg01no139_b13.b1 PHD_FILE: MSMg01no139_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:22 2005
(679 letters)
>mm_chr9_93746914_93747993
Length = 1080
Score = 1268 bits (656), Expect = 0.0
Identities = 671/676 (99%), Gaps = 2/676 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaaatcattaccctgtgta-aattatttgaggaaacagatttgatagaaggaa 63
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaatcattaccttgtgtacaattatttgaggaaacagatttgatagaaggaa 264
Query: 64 gataaaatcacatacccattttttactattatttaaaaggagtttctccttatggtgggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gataaaatcacatacccattttttactattatttaaaaggagtttctccttatggtgggg 324
Query: 124 agatagatcaaattgcaaaatgcttataatataagcagaagcgtctgagctcaggtccca 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 agatagatcaaattgcaaaatgcttataatataagcagaagcatctgagctcaggtccca 384
Query: 184 ctgtacttgggaaatctaggcccagtggcacagtgtctgtaatctcagcacatgggaggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtacttgggaaatctaggcccagtggcacagtgtctgtaatctcagcacatgggaggc 444
Query: 244 aggaaggaagatacagttcaattcctggagctgactgctcagccagcttagataattaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaaggaagatacagttcaattcctggagctgactgctcagccagcttagataattaat 504
Query: 304 gaattctaggttcaacaaaagaccctttctcaacaagtaatatggacatactcatgcatt 363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 gaattctaggttcaacaaaagaccctttctcaactagtaatatggacatactcatgcatt 564
Query: 364 attggtggaagtacaaatcaatgcatccactgtagaatgcagagtggtgattcctcatga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attggtggaagtacaaatcaatgcatccactgtagaatgcagagtggtgattcctcatga 624
Query: 424 agctaggactatgtctgctatatgacccaactctattgttccgatacccatatccaaagg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agctaggactatgtctgctatatgacccaactctattgttccgatacccatatccaaagg 684
Query: 484 gctatgtttcttactacaaagacacatatttgttcatgttcatggcttctatattaatag 543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 685 gctatgtttcttactacaaagacacatatttgttcatgttcatggcttctat-ttaatag 743
Query: 544 ctagggcactgaagcagcctagttatttactaactgataaatgaattatgaaaatatgct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctagggcactgaagcagcctagttatttactaactgataaatgaattatgaaaatatgct 803
Query: 604 gcctatacatggtagaattttattcagcaataaacatgaaatctctgagtaaatgtatag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gcctatacatggtagaattttattcagcaataaacatgaaatctctgagtaaatgtatag 863
Query: 664 atattgaaactctata 679
||||||||||||||||
Sbjct: 864 atattgaaactctata 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_b13.g1 MSMg01no139_b13.g1 CHROMAT_FILE:
MSMg01no139_b13.g1 PHD_FILE: MSMg01no139_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:22 2005
(611 letters)
>mm_chr9_93884359_93885370
Length = 1012
Score = 1129 bits (584), Expect = 0.0
Identities = 605/612 (98%), Gaps = 1/612 (0%)
Strand = Plus / Minus
Query: 1 tctcctctcctccttgtgcaccgttatctaccagcaccattactgtctggttgggaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctcctctcctccttgtgcaccgttatctaccagcaccattactgtctggttgggaccac 686
Query: 61 tcagctcctggcattaaggccccaagctccactccacctctccacctctccccattcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcagctcctggcattaaggccccaagctccactccacctctccacctctccccattcttc 626
Query: 121 cctctgtcttgttccagctgtaaaccctgggttgttctggtccagtcaatcttttcatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctctgtcttgttccagctgtaaaccctgggttgttctggtccagtcaatcttttcatta 566
Query: 181 tatctgtggatcttattttattttgttagggacattgatgatctttcctttccctataat 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 tatctgtggatcttattttattttgttagggacattgatgatcttacctttccctataat 506
Query: 241 tgtagatttattattttattttctcccctgcatgcgctctatcagacttatcgagtttct 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtagatttataagtttattttctcccctgcatgcgctctatcagacttatcgagtttct 446
Query: 301 tctttttcagaaatgtaatattccttgtatctcattttcttttttctacgtgtttgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttttcagaaatgtaatattccttgtatctcattttcttttttctacgtgtttgattt 386
Query: 361 ttatctctccttttcacagaaaaaatttagtaaaagacataatacctgccgatttcattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatctctccttttcacagaaaaaatttagtaaaagacataatacctgccgatttcattt 326
Query: 421 ctgacgtcccagatttctcatagtacttgccactagcatcctttttgataaatatactgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgacgtcccagatttctcatagtacttgccactagcatcctttttgataaatatactgt 266
Query: 481 gtagtgttcatagctttggcgactggtaatgttttacac-gtttatcactgtgtgttctt 539
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 265 gtagtgttcatagctttggcgactggcaatgttttacacagtttatcactgtgtgttctt 206
Query: 540 agactttccagggcaacattcttacctggatttcttcatgtggcaatggttgctccttta 599
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 agactttccagggcaacattcttacctggatttcttcatgtggttatggttgctccttta 146
Query: 600 cagtatcttttt 611
||||||||||||
Sbjct: 145 cagtatcttttt 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
