BAC Information

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BAC

Clone NameMSMg01-139L10
Chromosome9 (Build37)
Map Location 79,461,849 - 79,462,250
singlet/doubletsinglet
Overlap geneCol12a1
Upstream geneCd109, LOC384957, EG666456, LOC436085, LOC235509, LOC666479
Downstream geneCox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L10.T7 (MSMg01no139_l10.b1)MSMg01-139L10.TJ (MSMg01no139_l10.g1)
ACCAG345042AG345043
length715714
length of high quality
(start - end)
432 (45 - 476)401 (71 - 471)
definitionCHROMAT_FILE: MSMg01no139_l10.b1 PHD_FILE: MSMg01no139_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:12 2005CHROMAT_FILE: MSMg01no139_l10.g1 PHD_FILE: MSMg01no139_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGTTCTGTACCATGTGAAACTTTGATGTCTGTATACTGATCCAT
GGTGATTCTCTTGGATTTCAAAACTTAAAAGTAAAAAGAAAAATGCACAG
AACTCAAGGTAAACTTTATCAGCTTTAAAACCTAGAGAAGGTTTATATCT
AGAATATACAAAGAACTCAAAAACCAGAGTCAAGAAACAAAAGACCCAAT
TTAAAAATGGGCTGCAGATCTGAACAGAGAGTCCTTAATAGAAGAAATAA
AAATGGTCAAAAATGAAAGTGTTCATCATCCTTAGTAACCAAGAAAATGT
CAAATGAAACTTCTTTGAGATTTCATCTCACACTGTGAAAATGACTAAGA
TCAACAAAACAGCTGACAACAAATGCTAGTGAGGTTGTGGAGGAAAAGAC
TGTATATGGGAATGTAAATTGGCGCAGCCATACTGAACATCCGAATACAG
AAATCTTTAACAAAACAAAAACTCTTAAAGCTAAATCTCTCCTATGATCA
GCTATAACAACTCCCTAGCATATGCCTAAAGGACTCAGCATCCTACTGCA
CAGACAGATGTTCTGATATAGTAATTGTTGCTCTGCTCACCATATCTCGG
ACCCAGAAAGAACCTACATGCCCTTCAATTGACGGCTGGATGATGACCCT
GCGATCCATAATCCA
ATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTATGCTTACCCAAAATGTGTTCTTTTTA
TGTGTTTTAGGGAGGACCTGGCGCAAAAGGTCCCAGAGGTGAAAGAGGCA
TCAATGGGGCAGTTGTAAGTACATTTTAATGCTCCAAGGAGTCATGGATA
TCAAGTTGTTTAAATCCCCTTGGAGGTGGTCTTTGACCTTGGGCCACTTA
CTTTTGGTTTAGTAACATCAAGTCACATCACAGTTCTTGGCTTCAGACAT
TATGAACAAGGAGTGTAGATTCATCATAGTGGAAATTTGAACTCATGGGA
ATATGTGAATACAGATATAGCACATATTATATAATGGTTTTTACTTTAAA
AAGACCACCTTTAAAAGGACATTTGTTGAAATGTAGGTTTTGTTGTGAAT
TCATGGCACCACTTCCTGAAGGCGTATTAAAGGGAATGAAAGGGTGCGGC
CTCAATAGAGTTTTATACACGTATGTATTTTAAACTGCTCGCTGATTATT
ATTTAATCCCGCCTGTCTGTTTATGACTAGACCCTTTCCGACCCTTCTTA
ATGTTTATTAAGGTTCCCACCCCTATCTTTTTCCCCTTCCCCCTTCCCTA
TATTTTTTTCCTCCCCCCCCCCCCTCCTTTTTATTTATGGCCCCTTCTTT
TTTTTTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l10.g1 MSMg01no139_l10.g1 CHROMAT_FILE:
MSMg01no139_l10.g1 PHD_FILE: MSMg01no139_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:12 2005
         (401 letters)



>mm_chr9_79461649_79462450
          Length = 802

 Score =  762 bits (394), Expect = 0.0
 Identities = 400/402 (99%), Gaps = 1/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatgcttac-ccaaaatgtgttctttttatgtgttttagggaggacctggcgcaaaag 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cttatgcttacaccaaaatgtgttctttttatgtgttttagggaggacctggcgcaaaag 543

                                                                       
Query: 60  gtcccagaggtgaaagaggcatcaatggggcagttgtaagtacattttaatgctccaagg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtcccagaggtgaaagaggcatcaatggggcagttgtaagtacattttaatgctccaagg 483

                                                                       
Query: 120 agtcatggatatcaagttgtttaaatccccttggaggtggtctttgaccttgggccactt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtcatggatatcaagttgtttaaatccccttggaggtggtctttgaccttgggccactt 423

                                                                       
Query: 180 acttttggtttagtaacatcaagtcacatcacagttcttggcttcagacattatgaacaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acttttggtttagtaacatcaagtcacatcacagttcttggcttcagacattatgaacaa 363

                                                                       
Query: 240 ggagtgtagattcatcatagtggaaatttgaactcatgggaatatgtgaatacagatata 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggagtgtagattcaacatagtggaaatttgaactcatgggaatatgtgaatacagatata 303

                                                                       
Query: 300 gcacatattatataatggtttttactttaaaaagaccacctttaaaaggacatttgttga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcacatattatataatggtttttactttaaaaagaccacctttaaaaggacatttgttga 243

                                                     
Query: 360 aatgtaggttttgttgtgaattcatggcaccacttcctgaag 401
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatgtaggttttgttgtgaattcatggcaccacttcctgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space:   310856
Effective search space used:   310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)