BAC Information

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BAC

Clone NameMSMg01-139O21
Chromosome9 (Build37)
Map Location 77,082,811 - 77,083,332
singlet/doubletsinglet
Overlap gene2310046A06Rik
Upstream geneHcrtr2, C530008M07Rik, Tinag, LOC436082
Downstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139O21.T7 (MSMg01no139_o21.b1)MSMg01-139O21.TJ (MSMg01no139_o21.g1)
ACCAG345206AG345207
length731729
length of high quality
(start - end)		690 (40 - 729)639 (72 - 710)
definitionCHROMAT_FILE: MSMg01no139_o21.b1 PHD_FILE: MSMg01no139_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:29 2005CHROMAT_FILE: MSMg01no139_o21.g1 PHD_FILE: MSMg01no139_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAAATCCGCGGAATTCC
TTATGGGTACCCAGTTTGAATTGGAATTTCAGCAGGAAATGCTATAGGCT
TTTTAGAGGACGGGCTCCTTATTTGTTGGTGCTAGACATGACTTTTGTCT
GTGTCTGGGGAGGCAAAGAATACATCAGACATTAATGTCCAGAGCCTAGA
GCAAAATAAGTTGAAAAATCACAGCCTGGTATGAACTGAGACTCCACTAA
GAAGCAGAAGCAAGATCTAGCACAATAACTCTCCAAGAGGTTGCTTCTGT
AGAACAAAAGTTCACAACTTGTGGGTTAGGACTCCTCTGACAAACCTTTA
TCTCCAAATATATTTACATCGCAATTAGTAACAGTAGCAAAATTACAGTT
ATGACATAGCAATGAAGATAATTTTATGTCTGGGGGTCACCACAACCTGA
GGTATATTAAAGGGTCGCAGCATTAGGAAGGTTAAGAACTACTGCTGCAG
AAGATTTGCTATTTTACTACTGGCCCAGAATAGGTTTTAGACAAAGGACT
CAGTAAAAAACAGAATATTGTCATTATTCACCCCCACCACAGTCATACCT
GTTAAAATTTGAAGAGATAACCTCTCTTTCTATTTCACTTAGGATGGGAA
AGTTAGTTAACCTATAAAAAGGATGGATACATAAATCATGGGGTACAGCT
GACGAAGTGAAATACTTACAGAGAAGTGACT

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCATCTTTTAA
TGGGGTTCTTTGGATTTCTGGAGTTCAGCTTCTTGAGTTCTTCGGATATA
TTGGATATTAGTCCCCTATCAGATTTAGGATTGGCAAAAATTATTTCCCA
ATCTGTTGGTGGCATTTTTGTCTTATTGACAGTATCTTTTGCCCTACAGA
AGCTTTGCCATTTCATGAGGTCACATTTGTCCTTTCTTGATCTTACAGGA
CAGGCCATTGCTGCTCATTGAGTATGAAGTGCCCTTCCTTGTCTTTTTTT
GATAACTTTTGGTTGGAAGTCAATTTTATTTGATATTAAAATAGATACTG
CATCTTGTTTCTTCAGACCATTTGCTTGGAAAATTGTTTTCCAGCCTTTT
ACTCTGAGGTAGTGCCTGTCTTTGTCCCTGAGGTGAGTTTCCTGTATGCA
ACAAAATGTTGGGTCCTGTTTATGTAGCCAGCCTATTAGTCTATGTCTTT
TTATTGGGGAATTGAGTCCATTGATGTTAAGAGAAATCAAAGAAAAGTAA
TTGTTGCTTCCTGTCACTTTTTTGTTGTTGTTGTTAAAGTTGGGAATCTG
TTCTTGTGGCTGTCTACTTTTAGTTTTGTTAAAGGATTACTTTCTTGCTT
TTTCTAGGGTGTAGTTTCCATCTTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_o21.b1 MSMg01no139_o21.b1 CHROMAT_FILE:
MSMg01no139_o21.b1 PHD_FILE: MSMg01no139_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:29 2005
         (690 letters)



>mm_chr9_77082811_77083902
          Length = 1092

 Score =  870 bits (450), Expect = 0.0
 Identities = 504/522 (96%), Gaps = 2/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttatggg-tacccagtttgaattgga-atttcagcaggaaatgctataggct 61
           |||||||||||||||  || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 522 ggaattccttatgggaaactcagtttgaattggacatttcagcaggaaatgctataggct 463

                                                                       
Query: 62  ttttagaggacgggctccttatttgttggtgctagacatgacttttgtctgtgtctgggg 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 462 ttttagaggacgggctccttatttgttggtgctagacatgacttttgtctgtatctgggg 403

                                                                       
Query: 122 aggcaaagaatacatcagacattaatgtccagagcctagagcaaaataagttgaaaaatc 181
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aggcaaagaatacaccagacattaatgtccagagcctagagcaaaataagttgaaaaatc 343

                                                                       
Query: 182 acagcctggtatgaactgagactccactaagaagcagaagcaagatctagcacaataact 241
           |||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 342 acagtctggtatgagctgagactccactaaggagcagaagcaagacctagcacaataact 283

                                                                       
Query: 242 ctccaagaggttgcttctgtagaacaaaagttcacaacttgtgggttaggactcctctga 301
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 282 ctccaagaggttgcttctgtagaacaaaatttcacaacttgtgggttaggacccctctga 223

                                                                       
Query: 302 caaacctttatctccaaatatatttacatcgcaattagtaacagtagcaaaattacagtt 361
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 222 caaacctttatctccaaatatgtttacatcgcaatttgtaacagtagcaaaattacagtt 163

                                                                       
Query: 362 atgacatagcaatgaagataattttatgtctgggggtcaccacaacctgaggtatattaa 421
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 162 atgacatagcaatgaagataattttatgtctgggagtcaccacaatctgaggtatattaa 103

                                                                       
Query: 422 agggtcgcagcattaggaaggttaagaactactgctgcagaagatttgctattttactac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 102 agggtcgcagcattaggaaggttaagaactactgctgcagaagatttgctagtttactac 43

                                                     
Query: 482 tggcccagaataggttttagacaaaggactcagtaaaaaaca 523
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42  tggcccagaataggttttaggcaaaggactcagtaaaaaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1092
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1082
Effective search space:   735760
Effective search space used:   735760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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