BAC Information

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BAC

Clone NameMSMg01-140E03
Chromosome9 (Build37)
Map Location 96,971,569 - 96,972,120
singlet/doubletsinglet
Overlap genenone
Upstream geneGk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254
Downstream geneSlc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140E03.T7 (MSMg01no140_e03.b1)MSMg01-140E03.TJ (MSMg01no140_e03.g1)
ACCAG345449AG345450
length697690
length of high quality
(start - end)
640 (58 - 697)605 (82 - 686)
definitionCHROMAT_FILE: MSMg01no140_e03.b1 PHD_FILE: MSMg01no140_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:56 2005CHROMAT_FILE: MSMg01no140_e03.g1 PHD_FILE: MSMg01no140_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTATGGTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAAACAGTACCTACAGAGCTTCATGAACAGAATA
TAAGAAGTGGAAGAGAGAATCTCAAGCACTGAAGCTATTATAGAAGAAAT
GAATGCATTGGTCAAACAAAAGGATTAATCTAAAAATTTCCTGACACAAA
ATATCCAGGAATTCTGGGACACCATGAAAAGACCAAATGTAAAAATAATA
GGAATAGAGGAAGAAGAAGAATCACAGCTCAAAGGCCCAGAAGATATTTT
GAACAAAATAATAGGAGAAAAATTCCCTAACCAAAAGGAGGGGATACATT
TGAAGTATAAGAAGCTTATAGATAACCAAATAGATTGAACCAGAAAAGAA
AATCTCCTCACCACATAATAATCAAAACATTAAATATACACAAAAGAAAG
AATGTTGAAAGCTACAAATGAAAAGGGCCAAGTAACCTATAAGAGCAGAC
CTATTAGAATTACACCTGACTTCTCAGTGGAGACTCTAAAAACCAGAAAG
GGCCTGGACAGATGTGCCACAGACTCTAAGAGACCACAGATGTCAGCCCA
GATTACTATACCCAGCAAAACTTTAAATCACTATAGATTTATAAAATAAG
AGATTCTGTAATAAAGTCAAAATTAAATAATTTCTAGCTACAAATCC
ACTAANNACCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCTGCTACTTCCCACA
CTACAATCTCATTCCAGCTGAATTAGAACACTACATGTATGTCTGTTGCC
ATGAAGGCCAGAACAGGGTGTTGGAATCCCTGCAATTGAGTCACAGACTA
GTCTTTCGTTGTTGTTTTGTTTTTTGAGACAAGGTATCACTGTATAGTCC
TGGCTGTCCTGGCCTCCAATTCAGAGATCCTCTGCCTCCCAGTGCACCGC
CATGGCCCTTTATAAGAGCAGTCAGTAGCTCCTAACTGCTGAGCCATCTC
TCCAGGCTGACATTACTTCTACTAAGAGTTTATCTATAGGGATATCTTGA
CATCTACATGATAAGGTCCCACATCAATCTACATGACCTATACTGTGTTT
TATGCTCCCACAGGACAACACACACCTGGTCACAAGGGGAGTTTGGGACA
AAGCTCTACAAGCCTGCAAATCAGCATTAACCACCTGTACTGCAGAAGTT
TACATGGGTGCCATTCTGGAAAACTCACATTAACTCACAAAAGCAAACAA
GTGAGTGCAGACAGGAATGGGACTATCGTCCCACTACTGTTATTTATTCT
CTCCTCTTCTCCTTGGTTGCTGTGCATGCCCAAATAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_e03.g1 MSMg01no140_e03.g1 CHROMAT_FILE:
MSMg01no140_e03.g1 PHD_FILE: MSMg01no140_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:56 2005
         (605 letters)



>mm_chr9_96971316_96972320
          Length = 1005

 Score = 1004 bits (519), Expect = 0.0
 Identities = 546/561 (97%), Gaps = 11/561 (1%)
 Strand = Plus / Plus

                                                                       
Query: 47  acactacatgtatgtctgttgccatgaaggccagaacagggtgttggaatccctgcaatt 106
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 254 acactacatgtatgtctgttgccatgaaggccaaaacagggtgttggaatccctgcaatt 313

                                                                       
Query: 107 gagtcacagactagtctttcgttgttgttttgttttttgagacaaggtatcactgtatag 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagtcacagactagtctttcgttgttgttttgttttttgagacaaggtatcactgtatag 373

                                                                       
Query: 167 tcctggctgtcctggcctccaattca--gagatcctctgcctcccagtgcaccgccatgg 224
           |||||||         ||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 374 tcctggc---------ctccaattcacagagatcctctgcctcccagtgcaccgccatgg 424

                                                                       
Query: 225 ccctttataagagcagtcagtagctcctaactgctgagccatctctccaggctgacatta 284
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccctttataagagcagtcaggagctcctaactgctgagccatctctccaggctgacatta 484

                                                                       
Query: 285 cttctactaagagtttatctatagggatatcttgacatctacatgataaggtcccacatc 344
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 485 cttctactaagagtttatctatagagataacttgacatctacatgataaggtcccacatc 544

                                                                       
Query: 345 aatctacatgacctatactgtgttttatgctcccacaggacaacacacacctggtcacaa 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aatctacatgacctatactgtgttttatgctcccacaggacaacacacacctggtcacaa 604

                                                                       
Query: 405 ggggagtttgggacaaagctctacaagcctgcaaatcagcattaaccacctgtactgcag 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggggagtttgggacaaagctctacaagcctgcaaatcagcattaaccacctgtactgcag 664

                                                                       
Query: 465 aagtttacatgggtgccattctggaaaactcacattaactcacaaaagcaaacaagtgag 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aagtttacatgggtgccattctggaaaactcacattaactcacaaaagcaaacaagtgag 724

                                                                       
Query: 525 tgcagacaggaatgggactatcgtcccactactgttatttattctctcctcttctccttg 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgcagacaggaatgggactatcgtcccactactgttatttattctctcctcttctccttg 784

                                
Query: 585 gttgctgtgcatgcccaaata 605
           |||||||||||||||||||||
Sbjct: 785 gttgctgtgcatgcccaaata 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)