Query= MSMg01no140_n12.b1 MSMg01no140_n12.b1 CHROMAT_FILE:
MSMg01no140_n12.b1 PHD_FILE: MSMg01no140_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:42 2005
(503 letters)
>mm_chr9_73227431_73228334
Length = 904
Score = 797 bits (412), Expect = 0.0
Identities = 478/500 (95%), Gaps = 1/500 (0%)
Strand = Plus / Minus
Query: 5 gaattctcccttctc-cctgacatttctatacctacaatcttatatcttaaggggtaaaa 63
||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 704 gaattttcccttcacaactgacatttctatacctacaatcttacatcttaaggggtaaaa 645
Query: 64 tgaatataaatgaaatactgcttcttattaaaaattagaaactttcttctgcttaagtaa 123
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 644 tgaatataaatgaaatactgcttcttattaaaaattagaaactttcctctgcttaaataa 585
Query: 124 gaactcagacaagcccccagcccttcctggtaactcttccacacatagagtttataatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaactcagacaagcccccagcccttcctggtaactcttccacacatagagtttataatta 525
Query: 184 ttttagaatggttttattggaactaaaatggccacatatagcctaaagccatcactcata 243
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttgtagaatggttttattggaactaaaatggccacatatagcctaaagccatcactcata 465
Query: 244 cttaattatagcaaatcaaacttatctttattccacatagtttgttaccagtcccaaaca 303
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 464 cttaattatagcaaatcaaacttatctttagtccacatagtttgttaccagttccaaagg 405
Query: 304 actgtcatgtgatccaacttaattctcttaagttttcagaaaaatcttattagacacatt 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 404 actgtcatgtgatccaacttaattcttttaagttttcagaaaaatcttattagacacatt 345
Query: 364 ttacaaatagggataagaaggccggagaagatgtcattttcccatggatcatatttatta 423
|||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||
Sbjct: 344 ttacaaatagggataataaggccagagaagatgtcatttttccatggatcatatttacta 285
Query: 424 taattctgtgtcacagaatataaactccaaaacatgactcctgttgtcctacatagacta 483
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taattctatgtcactgaatataaactccaaaacatgactcctgttgtcctacatagactg 225
Query: 484 atacacataataccctgcca 503
||||| |||||||||||||
Sbjct: 224 atacatgtaataccctgcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space: 440742
Effective search space used: 440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_n12.g1 MSMg01no140_n12.g1 CHROMAT_FILE:
MSMg01no140_n12.g1 PHD_FILE: MSMg01no140_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:42 2005
(375 letters)
>mm_chr9_73090230_73091004
Length = 775
Score = 675 bits (349), Expect = 0.0
Identities = 367/373 (98%)
Strand = Plus / Plus
Query: 2 catggtgcagtgaaccagtttcagtgagaggtgggcaaaagggaagaggcatgtctagag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 catggtgcagtgaaccagtttcagtgagaggtgggcaaaagggaagaggcatgtctagag 261
Query: 62 gcttctgtgcattggagtgtagctgacagggagtgttcttgcatgtggtaactgattcag 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 gcttctgtgcattggagtgtagctgacagggagtgttcttgcgtgtggtaactgattcag 321
Query: 122 tcaggagaaaagaccttaatggggtcagagctggggaactcagcagccagcagccagact 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcaggagaaaagaccttaatggggtcagagctggggaactcagcagccagcagccagacc 381
Query: 182 gtgtgtgctagagagcagggtatggtaattattaaatatgcttgtccataaggatgtgcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgtgtgctagagagcagggtatggtaattattaaatatgcttgtccataaggatgtgcc 441
Query: 242 ctgaagccaaactaaatgtgatctagtttattagacagggacacaccttatttgaacaat 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgcagccaaactaaatgtgatctagtttattagacagggacacaccttatttgaacaat 501
Query: 302 gagatgctgtgggaaaagccagtttgttagtgggaagttactagcattccaggctaagca 361
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 502 gagatgctgtgggaaaagccagtttgccagtgggaagttaccagcattccaggctaagca 561
Query: 362 tcatgtacttgag 374
|||||||||||||
Sbjct: 562 tcatgtacttgag 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
