BAC Information

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BAC

Clone NameMSMg01-140N21
Chromosome9 (Build37)
Map Location 48,043,723 - 48,044,300
singlet/doubletsinglet
Overlap geneD930028F11Rik
Upstream geneCadm1, LOC100043303
Downstream gene4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140N21.T7 (MSMg01no140_n21.b1)MSMg01-140N21.TJ (MSMg01no140_n21.g1)
ACCAG345893AG345894
length714713
length of high quality
(start - end)
578 (73 - 650)549 (73 - 621)
definitionCHROMAT_FILE: MSMg01no140_n21.b1 PHD_FILE: MSMg01no140_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:44 2005CHROMAT_FILE: MSMg01no140_n21.g1 PHD_FILE: MSMg01no140_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATGCGCGGAA
TTCTGTGTAGATTCCAGAGAGAATTTGGAGACCAGCCCCATCCCTGCAGT
GGGGCAATACCGACAGAGCCAGCTTCATCTCTTAGCCAGCCTCATTCTGT
AGTTCTGGAAGCCAGACATCTACATTTCATTTAGCTCCTACTTTCAAGCC
TTTGTCTCCAGCTTCCACTCTGGAGTCCTTGGTAGTTTACCAGTAAGGAT
AAGATCACTCCTTTGGTTTCTCTTGCTTTTTTGAACAGTGTGGTATTTGC
CTATCTACACAGGGTGTATATGGGATGCTTGTGAAATGGCCCAAGATTAT
CTAGAAGGAGAAGATCCACCTAACTCAGCTTGGGTAGACCAAGAAAGTGT
TCCCAGAGACTTTTGAAGGATATTCTTGCTAGGAAAAGTCCTGGGAGCTA
GGGACCCCACATAGAAGAAGTGCTAAACACAAAGGGAAAGAACCTACAGT
GTAACGGTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCA
AGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTG
CTGTTCATCACCAAGGAAGTCAGGAATGGAACTCAAGCAGGTCAGGAAGC
AGGAGCTGATGCAGAGGCCGTGGAGGGATGTTCTTTACTGGCTTGCTTCT
CCTGGCTTGCTCAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATACCCAGAATATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAATTGG
ATATTAGCCCAAAATCTATGATACCCAAGATATTAGATACAATTTCCTAT
ACACATGAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_n21.b1 MSMg01no140_n21.b1 CHROMAT_FILE:
MSMg01no140_n21.b1 PHD_FILE: MSMg01no140_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:44 2005
         (578 letters)



>mm_chr9_48043523_48044500
          Length = 978

 Score = 1110 bits (574), Expect = 0.0
 Identities = 577/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggagaccagccccatccctgcagtggggcaataccgacagagccagcttcatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttggagaccagccccatccctgcagtggggcaataccgacagagccagcttcatctct 260

                                                                       
Query: 61  tagccagcctcattctgtagttctggaagccagacatctacatttcatttagctcctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagccagcctcattctgtagttctggaagccagacatctacatttcatttagctcctact 320

                                                                       
Query: 121 ttcaagcctttgtctccagcttccactctggagtccttggtagtttaccagtaaggataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaagcctttgtctccagcttccactctggagtccttggtagtttaccagtaaggataa 380

                                                                       
Query: 181 gatcactcctttggtttctcttgcttttttgaacagtgtggtatttgcctatctacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcactcctttggtttctcttgcttttttgaacagtgtggtatttgcctatctacacag 440

                                                                       
Query: 241 ggtgtatatgggatgcttgtgaaatggcccaagattatctagaaggagaagatccaccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgtatatgggatgcttgtgaaatggcccaagattatctagaaggagaagatccaccta 500

                                                                       
Query: 301 actcagcttgggtagaccaagaaagtgttcccagagacttttgaaggatattcttgctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcagcttgggtagaccaagaaagtgttcccagagacttttgaaggatattcttgctag 560

                                                                       
Query: 361 gaaaagtcctgggagctagggaccccacatagaagaagtgctaaacacaaagggaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaagtcctgggagctagggaccccacatagaagaagtgctaaacacaaagggaaagaa 620

                                                                       
Query: 421 cctacagtgtaacggtgtcttagtcagggtttctattcctgcacaaacatcatgaccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctacagtgtaacggtgtcttagtcagggtttctattcctgcacaaacatcatgaccaag 680

                                                                       
Query: 481 aagcaagttggggaggaaagggtttattcagcttacacttccatactgctgttcatcacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagcaagttggggaggaaagggtttattcagcttacacttccatactgctgttcatcacc 740

                                                 
Query: 541 aaggaagtcaggaatggaactcaagcaggtcaggaagc 578
           ||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 aaggaagtcaggactggaactcaagcaggtcaggaagc 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)