Query= MSMg01no140_o01.b1 MSMg01no140_o01.b1 CHROMAT_FILE:
MSMg01no140_o01.b1 PHD_FILE: MSMg01no140_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:45 2005
(649 letters)
>mm_chr9_7818003_7819053
Length = 1051
Score = 1191 bits (616), Expect = 0.0
Identities = 642/652 (98%), Gaps = 7/652 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcatgaatc-catcagaaacactttttaaaaa-atttatttattatat--aca 59
|||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 201 ggaa-tctcatgaatcacatcagaaacactttttaaaaagatttatttattatatacaca 259
Query: 60 gtgttttgcctgcatacatccctgcacacactacaatgatgcacgcctttaaaagaaaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgttttgcctgcatacatccctgcacacactacaatgatgcacgcctttaaaagaaaca 319
Query: 120 ctttaatatatttctcacaaacagaaaatatttaccagtagcagaaaaatccttattttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttaatatatttctcacaaacagaaaatatttaccagtagcagaaaaatccttattttc 379
Query: 180 cagaaaggaaaagcaccaagaagcacagggtaccctaactgctgagtaccagagccactg 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 cagaaaggaaaagcaccaagaagcacagggtaccctaactactgagtaccagagccactg 439
Query: 240 gtttcaggatttctgagctccacatcacctgaatccaaagctttcacaaattccaaatcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtttcaggatttctgagctccacatcacctgaatccaaagctttcacaaattccaaatcc 499
Query: 300 aagaagtcctgaaggacatacagcaagcatcccgactcctgctctggaacagacacagtc 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 aagaagtcctgaaggacatacagcaagcatcccaactcctgctctggaacagacacagtc 559
Query: 360 ctgtagctcaacagcatagaccttcccttgcaacagactaagcttaaatatacaatgcta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgtagctcaacagcatagaccttcccttgcaacagactaagcttaaatatacaatgcta 619
Query: 420 cccttcataaagcaagattactaatcttgaaagag--tagaatgtcctgctgaagagctg 477
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 620 cccttcataaagcaagattactaatcttgaaagagagtagaatgtcctgctgaagagctg 679
Query: 478 aaatcagtagttcattctttgttctgacagcttctgatgtccaacaatactttcagacca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaatcagtagttcattctttgttctgacagcttctgatgtccaacaatactttcagacca 739
Query: 538 ttcttcactcatgagagaaatgtacgcacagtccccttgattgtccccctgcagatgggg 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcttcactcatgagagaaatgtgcgcacagtccccttgattgtccccctgcagatgggg 799
Query: 598 cacttccttagagaaggggcacattcctggcagactactagatgaccacacg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cacttccttagagaaggggcacattcctggcagactactagatgaccacacg 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1051
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1041
Effective search space: 665199
Effective search space used: 665199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_o01.g1 MSMg01no140_o01.g1 CHROMAT_FILE:
MSMg01no140_o01.g1 PHD_FILE: MSMg01no140_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:45 2005
(517 letters)
>mm_chr9_7945272_7946188
Length = 917
Score = 946 bits (489), Expect = 0.0
Identities = 510/517 (98%)
Strand = Plus / Minus
Query: 1 ttcctaatttttcataaatcctaggtttatttaattagttcagggccagcctggtctaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttcctaatttttcataaatcctaggtttatttaattagttcagggccagcctggtctaca 711
Query: 61 tggtgaattccaagccattcagggctacatagtaagacaatggtattgcagagtagttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tggtgaattccaagccattcagggctacatagtaagacaatggtattgcagagtagttac 651
Query: 121 ccttacaccctgtacactgctaatagtttacatctttgatttactaactaaaattctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccttacaccctgtacactgctaatagtttacatctttgatttactaactaaaattctctt 591
Query: 181 gaggaagtgatgccataaagagctttctggttttttcttgtttggcttttgctttttaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaggaagtgatgccataaagagctttctggttttttcttgtttggcttttgctttttaag 531
Query: 241 ttctgattctatttagaccaaactctagaaatctgtcagaaacagcccaatttaatatgt 300
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttctgagtcaaaaaagaccaaactctagaaatctgtcagaaacagcccaatttaatatgt 471
Query: 301 ttattttagaaataatgaagaactttatgacttaaaggtgagttgcgaaatgagacaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttattttagaaataatgaagaactttatgacttaaaggtgagttgcgaaatgagacaaat 411
Query: 361 acgaccctggtctgtcttggtttagtttttgaatcagggttgaccttgaacttggatcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acgaccctggtctgtcttggtttagtttttgaatcagggttgaccttgaacttggatcac 351
Query: 421 caccatacctggctaagaccttgaacaattgcagcttataaattgttggtttagcggggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 350 caccatacctggctaagaccttgaacaattgcagcttataaattgttggtttagccgggc 291
Query: 481 agtggtggcccacgcctttaatcccagcacttgggag 517
|||||||||||| ||||||||||||||||||||||||
Sbjct: 290 agtggtggcccatgcctttaatcccagcacttgggag 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
