BAC Information

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BAC

Clone NameMSMg01-141K08
Chromosome9 (Build37)
Map Location 26,370,315 - 26,370,949
singlet/doubletsinglet
Overlap genenone
Upstream gene2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K08.T7 (MSMg01no141_k08.b1)MSMg01-141K08.TJ (MSMg01no141_k08.g1)
ACCAG346466AG346467
length1,2711,293
length of high quality
(start - end)
261 (467 - 727)646 (133 - 778)
definitionCHROMAT_FILE: MSMg01no141_k08.b1 PHD_FILE: MSMg01no141_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:17 2005CHROMAT_FILE: MSMg01no141_k08.g1 PHD_FILE: MSMg01no141_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTCCCTGNNNNNACATTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTAGGTCCTAGTAGAAACCAATCAGGTCTCCCNAAANNNGA
ANAGNGNNNGNANNCCNACTTTAAAGCTCCCCTNGGNNNNAANAAAAAGA
AGNCNNNCNNNANAGGGAGGGAGANGAAGGCAGAGACNCAGGGCGGCNCA
AAGGGNNGAGAANAAGGGACNANAGAGGGNNCAGCCNNNAGGNNANANAC
NANAAGGNNCAGGAAGCANCCCAGAAAAGAGGNCAGAAAAAAAAGGGGAG
AGCNGAAANCAGAGAGAAGGANANCGGCCANNCAGAAACAGAACAGNCNA
GAAGCCAANCAACAGGAACNGGNNGGCAAGGAGAGGAAGGGACNNNCCAA
NANCACGGCTCTTTTTTGGGATTTTATTTCTTAGTCTCTAAGTGTTTTAT
TTAGGTTAGCCTAACCATGATTCTGAAGGAAAAACATAACCATTGCAATC
TTAAATTCACAACTGCTATGGTTAGCTGTATTGGGTCTATACAAGACTGA
CCCTGTTAATAATCAGTCATATATGAGGAGGGCTCACAGGATCCTCCTTC
TCCCTGCAAAGCTATTGATATTGAACCAATCTAAGACAGGAAGATCTTTA
CTTGTGCACCCACCAGGGAGCTCACTAAGCTCCACTGGATAATTTCAAGT
CCATGGTCACACAAATGTCCTCGGCTAAACTCAGTGGGTCAAAACAGCAA
ATAAAAACATATGAATATGAGAAAAAAATATGTGAGATCCCTTATTGTTG
GATATTAGAAGTTTGTGAGCTTCCTGAATTGAGTTTCAGAAACTCAAATT
GGGTTCTCTGGAAGAGCAGCACTCTTTACTATTCAGCCAACTCTTTTTTC
CAGGTAATTTATTACAATACAAGTTCCAATGGAAAACCAGGTAAGTTCCT
ATGGTTAATCAACCGGGTTTCCTGGAATTATAGAAGTATGTATATTAGAA
ATGAATTAACTTTTTCTTAATGGGCTTAAGTTTATAGGTATGACCTGTTT
ATTTTGTTTCTCNCTGATACTTAATTGGAAACTTACTCCTCTGAATTCTT
TTCCTCGCCTCGGGGATCTAACGGGCTTTACTTTTCTTTATATTCACGGA
AATGGTTTTATTTTTCTAATATTATAAATTATTCTATAACTGTGGTTTAT
CAATTGGTTAATGTTATTTTTTTTTACTATGAAAGATTGGTTCANCTATC
CTTCTCGGGTATATATGGGCA
NCCATCCCTTTNTNTTACATGGNATGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATAAGCATCTAAAATGGA
GACCCACAGGGGATTAAGCCCCCTATAAGAAACATGTTAAATATGAAGGT
CAATATAAAAACTGCATTAGTAAGTTTTTTGTAGACAGATGACTTTTTCA
AAGCACAAATAGGATTGTAAGGTAGAGAATTTAATGCATTGAAGTAAAAG
GTATAAATCAGGAATACAATACATGGAACCTCACAAGCAAAGTGCCACCC
TTTGAAAACATAAAGTATTAAGGGTGAAGTGCCCAGTGTGAGTGATGTAA
TATTATTTCAGTGTTTCCTAAATCAGTCTCTGGAGTAACTACCAGTATAC
TTTCACTATATTGATATTTCTTTATCTGGAGTTCTTGAGATCAGAAATAC
TTTGGATTTCAAAGTTTTTAGTTTGGAACATTTGCATACATATGAGATGA
CTTGAGGATAAGACCCAAGTACAAATATGAAATGGATTATATTTCACATG
TGCCTTATAAATGGAGCCTGGAGATAAGTTTATATGCTATTTTAGTTTGC
CTATGTTTTGACTGCAGCTCAACATATGAAATCAAGTGTGGGATTTTCTA
CTTAGTATATAATGGTGCTACCAAATATGTTGGATTTTGTACCATTTTGG
AGTTACATTTTCAACAACTACAATGACAAAAGCCATAGTGATAACGGCAA
CAACAACTACAACAACAACAGTGCCTAGCTTTAAAACCCCTAGGATAGCT
GTTCTTAACCTGTGTGTTTTGACCACATAGAGGTGGCATATCAGATATCC
TGCAAGTCAGAAATTAAAATTATGATTAATAACTATCGTCAAATTACCGT
TTATCATGAAAGTTACCAAAATATTTTTTGTGTTTATGTTTGCCACTACC
ATGAGGAACTTGTATTTAATGGGTTGTCTCCTTCCATATGTTTGTAAAAC
TCTTTTCTTTACGTTAATTTCTTATTATATGCTATTCTATTCCTCTTTGA
TCTCTTATTAAGGTCCCTTATGTCGTTTTAGATTTACTATTACTTTTCCT
TGTTTTTTTCTTATTATTTCCCACTCTTTTTTTGTTTATATCCTACTTCT
ATCTTTTCTATTCTTTATTATTGTGCNTTTCCTTTTCTTATTTAATCTAC
TTACTATATTTTTTTCTACTCTCTCTTTCTGTTATATTTCCCTTACTTAC
TTTGTCTTTCTTTTCCTATGATTCTCTCTCTTAATTTATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k08.g1 MSMg01no141_k08.g1 CHROMAT_FILE:
MSMg01no141_k08.g1 PHD_FILE: MSMg01no141_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:17 2005
         (646 letters)



>mm_chr9_26370172_26371216
          Length = 1045

 Score = 1143 bits (591), Expect = 0.0
 Identities = 626/639 (97%), Gaps = 4/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   aatatgaaggtcaatataaaaactgcattagtaagttttttgtagacagatgactttttc 67
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 778 aatatgaaggtcaatagaaaaactgcattagtaacttttttgtagacagatgactttttc 719

                                                                       
Query: 68  aaagcacaaataggattgtaaggtagagaatttaatgcattgaagtaaaaggtataaatc 127
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaagcacaaatagtattgtaagatagagaatttaatgcattgaagtaaaaggtataaatc 659

                                                                       
Query: 128 aggaatacaatacatggaacctcacaagcaaagtgccaccctttgaaaacataaagtatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aggaatacaatacatggaacctcacaagcaaagtgccaccctttgaaaacataaagtatt 599

                                                                       
Query: 188 aagggtgaagtgcccagtgtgagtgatgtaatattatttcagtgtttcctaaatcagtct 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aagggtgaagtgcccagtgtgagtgatgtaatattatttcagtgtttcctaaatcagtct 539

                                                                       
Query: 248 ctggagtaactaccagtatactttcactatattgatatttctttatctggagttcttgag 307
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 538 ctggagtaactaccagtatactttcactatattgata-atctttatctggagttcttgag 480

                                                                       
Query: 308 atcagaaatactttggatttcaaagtttttagtttggaacatttgcatacatatgagatg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atcagaaatactttggatttcaaagtttttagtttggaacatttgcatacatatgagatg 420

                                                                       
Query: 368 acttgaggataagacccaagtacaaatatgaaatggattatatttcacatgtgccttata 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acttgaggataagacccaagtacaaatatgaaatggattatatttcacatgtgccttata 360

                                                                       
Query: 428 aatggagcctggagataagtttatatgctattttagtttgcctatgttttgactgcagct 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatggagcctggagataagtttatatgctattttagtttgcctatgttttgactgcagct 300

                                                                       
Query: 488 caacatatgaaatcaagtgtgggattttctacttagtatataatggtgctaccaaatatg 547
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 299 caacatatgaaatcaagtgtgggattttctacttagtatatgatggtgctaccaaatatg 240

                                                                       
Query: 548 ttggattttgtaccattttggagttacattttcaacaactacaatgacaaaagccatagt 607
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 239 ttggattttgtaccattttggagttagattttcaacaactacaatgacaaaagccatagt 180

                                                  
Query: 608 gataacggcaacaacaactacaacaacaacagtgcctag 646
           ||||| |||||||||||| ||||||||||   |||||||
Sbjct: 179 gataatggcaacaacaacaacaacaacaa---tgcctag 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1045
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1035
Effective search space:   658260
Effective search space used:   658260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)