Query= MSMg01no141_m01.b1 MSMg01no141_m01.b1 CHROMAT_FILE:
MSMg01no141_m01.b1 PHD_FILE: MSMg01no141_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:31 2005
(682 letters)
>mm_chr9_72227720_72228803
Length = 1084
Score = 1207 bits (624), Expect = 0.0
Identities = 672/696 (96%), Gaps = 17/696 (2%)
Strand = Plus / Plus
Query: 2 cttgatacccttgacagcagctctccccctt--tgttggtagggtctgacattgctgaag 59
||||||||||||||||| ||||||||| || |||||||||||||||| ||||||||||
Sbjct: 202 cttgatacccttgacagtagctctccc--ttactgttggtagggtctgaaattgctgaag 259
Query: 60 taagaccccagactcagtatgcaaaaacaacactgtttattctgtagaaacaaccagcgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taagaccccagactcagtatgcaaaaacaacactgtttattctgtagaaacaaccagcgt 319
Query: 120 gcagggctcaaccattctttgaaatggtgacc--agataaaggcacgaaggccttcttat 177
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 320 gcagggctcaaccattctttgaaatggtgaccccagataaaggcacgaaggtcttcttat 379
Query: 178 agggaaatgggggaactctctaaagattaggtaatctaaatttcattggtgggagctagg 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agggaactgggggaactctctaaagattaggtaatctaaatttcattggtgggagctagg 439
Query: 238 ggg---tcacag--------tcatctctattcctatgtcaaattttggtaacattgggta 286
||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 ggggggtcacaggtgatcagtcatctctattcctatgtcaaattttgggaacattgggta 499
Query: 287 taagataatataatcttcaactgaaaataattttacttaatattttcccatttgtatccc 346
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 taagataatataatcttcaactgaaaataatttgacttaatattttcccatttgtatccc 559
Query: 347 ttctcttaccttattgctccagctaatgcttcaatcacattatggatgagcagtagggac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttctcttaccttattgctccagctaatgcttcaatcacattatggatgagcagtagggac 619
Query: 407 agtgggcaatcctctcccattcctgattttaacggggcttattaatgcttttattcattt 466
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 agtgggcaatcctctcccattcctgattttaatggggcttattaatgcttttattcattt 679
Query: 467 aagatgatattggccatgggtttgtcatatttaacctttattatgtggaatgtttcctac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagatgatattggccatgggtttgtcatatttaacctttattatgtggaatgtttcctac 739
Query: 527 agtcctacttgttctagggcttttattaagaatgcatgttaaagccaagcatggtggcgc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtcctacttgttctagggcttttattaagaatgcatgttaaagccaagcatggtggcgc 799
Query: 587 atgcctttagtcccagcactcgggagacagaggcaggcagatttctgagttcgaggccag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgcctttagtcccagcactcgggagacagaggcaggcagatttctgagttcgaggccag 859
Query: 647 cctggtctacaaagtgagttccagggcagccagggt 682
||||||||||||||||||||||||||||||||||||
Sbjct: 860 cctggtctacaaagtgagttccagggcagccagggt 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1084
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1074
Effective search space: 721728
Effective search space used: 721728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_m01.g1 MSMg01no141_m01.g1 CHROMAT_FILE:
MSMg01no141_m01.g1 PHD_FILE: MSMg01no141_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:31 2005
(673 letters)
>mm_chr9_72327156_72328228
Length = 1073
Score = 1263 bits (653), Expect = 0.0
Identities = 668/673 (99%)
Strand = Plus / Minus
Query: 1 ttatgttgttgattatatgttaaattgacatatatttgaaaaggataacttaattgatta 60
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 873 ttatgttgttgattatatgttaaattgatatatatttgaaaaggataatttaattgatta 814
Query: 61 gcaacacataagtaatcaaatgagttttttaatgaatataattttctttctgattaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gcaacacataagtaatcaaatgagttttttaatgaatataattttctttctgattaattt 754
Query: 121 agactctgcatgtaactagcaaaagactgaggtgtgtgaggtgtttttttttatatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agactctgcatgtaactagcaaaagactgaggtgtgtgaggtgtttttttttatatataa 694
Query: 181 gactgagtttttaattatctaaaagtattgtattcgttagcagcagtgcctctaaaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gactgagtttttaattatctaaaagtattgtattcgttagcagcagtgcctctaaaatta 634
Query: 241 ctgaaattgtgaggatccacctgtgctgttgggacaaaaaccagaacaattggaatgagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctgaaattgtgaggatccacctgtgctgttgggacaaaaaccagaacaattggaatgagt 574
Query: 301 aagcatagttactgtgaactgtcattcggctgtgaaatgaatacgggtgtgcactatggt 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 573 aagcatagttactgtgaactgtcatttggctgtgaaatgaatacgggtgtgcactatggt 514
Query: 361 tagctgcgactccaatctggctcccgagcccctctgtgatagcagtgtctccatttgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tagctgcgactccaatctggctcccgagcccctctgtgatagcagtgtctccatttgaaa 454
Query: 421 attagagtttgtcaaatgatgtcttgaacctagctaatatatcacaaaaggctgacagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attagagtttgtcaaatgatgtcttgaacctagctaatatatcacaaaaggctgacagta 394
Query: 481 tctgaggcaggtggtctttcagagcagcgttgtttgagctcagtacaaaccagcagtcac 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 393 tctgaggcaggtggtctttcagagcagcgttgtttgagctcaatacaaaccagcagtcac 334
Query: 541 gtctcagctgtgcttagctgttcagccagggtgccggacagtcagtggtcaccaaggtca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtctcagctgtgcttagctgttcagccagggtgccggacagtcagtggtcaccaaggtca 274
Query: 601 gtggcagattcccttattgctcggatacatggcttgtatgcattacactacattggagac 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtggcagattcccttattgctaggatacatggcttgtatgcattacactacattggagac 214
Query: 661 cagcctctgcaga 673
|||||||||||||
Sbjct: 213 cagcctctgcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
