BAC Information

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BAC

Clone NameMSMg01-141O23
Chromosome9 (Build37)
Map Location 48,843,631 - 48,844,221
singlet/doubletsinglet
Overlap geneUsp28
Upstream geneD930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b
Downstream geneLOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141O23.T7 (MSMg01no141_o23.b1)MSMg01-141O23.TJ (MSMg01no141_o23.g1)
ACCAG346677AG346678
length1,0221,218
length of high quality
(start - end)
532 (126 - 657)587 (126 - 712)
definitionCHROMAT_FILE: MSMg01no141_o23.b1 PHD_FILE: MSMg01no141_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:56 2005CHROMAT_FILE: MSMg01no141_o23.g1 PHD_FILE: MSMg01no141_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTTNNATTTTTCATTCGCCGCTAACACTCCTAAGGGAGAGGATCCG
CGGAATTCCTGATCTTTCCCATTTCAATAAAGGACCGGGNGNNGGANCNT
GNCAAAGGCTTTTCTTTAAAATAACGAGATGATCATGTGGNTTTTGTCTT
TGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAAC
CATCCCTGCAACCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTC
TTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTG
CATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGA
TCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGTTTT
TTTTAGAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCACAACTG
GAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCT
GGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTC
TTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACT
TTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCC
AGTTTTGTTGAGAATAAGCTTTTGTACAATGATCTTGATGGTGTTTTGTA
TTTTCTCCGGATCTGTTTCTATGTTTTCTTCTTTTTTTTTCTGAATTTTG
TCGATTTTATTTTTTTTCTTTTTGTCCTTCTACTGTATCTTATTCTTTTT
TTTTTTTTTATTCTTTGTTATTCTCTTTCTCTTAATCTTCTCCTTTTGTT
TTTTTTTTCTCTCTTCTTTACATTCCCTTTCCTTGTCTTTTTTCTTTATA
TTCTTTTTTTCCCTTTCTTTTCTTTTTTCTATCTTTTTTTTTATACTTCA
TTTTTATTTTTATCCTTTTTTTTTTTAGCTTCTTTCTCTTTATTTTTTTT
TTCTTTTTTTATTCTCTTTTTT
NCCCCCCTTNTTATAAGCATGGAGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAGGCTAGNGNGAATCAA
TGAGAGGCCCTCTGGTGTCTCTTGTCAGTTTCTGTCTGCCAGCTGAAGTC
CGTGGTGTCCCCTTTCCCACGCCTCAGTTCTGTCGTTAACAGGCATTTCA
TGAGGAGTACTCCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCTCTC
ACAGTGACCCTCGCCTTCAGCATGTTCTTGTCTACTTTTTCCAAAATGAA
GCACCCAAGAGGGTAGTAGAACGGACCCTTCTGGAACAGTTTGCGGATAG
AAACCTTAGCTATGATGAGAGGTGAGAATGTGCCAGCCTGTTCCTGTGTG
GGGTCTTACTCGGTAACTTCCTCCAATATGGAGGAGCTGCCCTGAACCCT
GCCATTGCTTTCTGAACTCTGTCCCTCACAGATCTATCAGTATCATGAAG
GTGGCTCAGGCTAAACTGATGGAAATTGGTCCAGATGACATGAACATGGA
AGAGTATAAGGTAAGTGTGGGGCTTTGTTTCTTTTTAATTCCTTCCAAAA
CCTTACTTCTAGAGGCAAGTGATTCTTAAGATAAAATGAAGTTTTATGTT
ACTAGACTCAACTAGTTCCCTATGAACTTGAAAGGAGAAGGAAAAAAAAC
AAAGCTGAGGGTGGTGGGCCACACTTTAACCCCAGCACTCAGGAAGCCAA
GAGTAAGTATATCGTTGAGTTCAAGCCCAGCCTGGCCTACATAAGGAGTT
CTAGGACAGCCGAGATAGAAATTGAAAGGGGAAAATTGCCGTGCATTGGC
ACATGCCTTTAATCCTAACACTTGCGAGGCAAAGCAGGCAAATTTCGAAT
GAATTCCTCTCAAAGCCAGGTTATACAGAGAAAACCTGTCTCAAAAAACC
CAAAAAAAAAAAGGGAATTGGGGGTGGTGAAAAATGAAAAACAAACCCTT
GTCTTAAGTTCCAAAAACAACAGGCCCTTGTTTTTTTATCCCTTGGAAAA
CCCTGGTGCCTGCTCCCTTTTCCCAAAAGGGGTTTTTTTTAAATACTTTT
GCCCTATAAACAAATGGTTTTGTGGTGTTGAAAATGACCACGGGTTTTTT
AAATGGGGCCATTAAAAAAAAACGTGTGGCATTTTCTCAATGTTTACTTA
TAAACCCAACCCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_o23.g1 MSMg01no141_o23.g1 CHROMAT_FILE:
MSMg01no141_o23.g1 PHD_FILE: MSMg01no141_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:56 2005
         (587 letters)



>mm_chr9_48843431_48844417
          Length = 987

 Score = 1062 bits (549), Expect = 0.0
 Identities = 579/591 (97%), Gaps = 4/591 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtttctgtctgccagctgaagtccgtggtgtcccctttcccacgcctcagttctgtcg 60
           |||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cagtttctgtctgtgtgctgaagtccgtggtgtcccctttcccatgcctcagttctgtcg 260

                                                                       
Query: 61  ttaacaggcatttcatgaggagtactccaggctctatcagcttgccaaagagacacccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacaggcatttcatgaggagtactccaggctctatcagcttgccaaagagacacccac 320

                                                                       
Query: 121 ctctcacagtgaccctcgccttcagcatgttcttgtctactttttccaaaatgaagcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcacagtgaccctcgccttcagcatgttcttgtctactttttccaaaatgaagcacc 380

                                                                       
Query: 181 caagagggtagtagaacggacccttctggaacagtttgcggatagaaaccttagctatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagagggtagtagaacggacccttctggaacagtttgcggatagaaaccttagctatga 440

                                                                       
Query: 241 tgagaggtgagaatgtgccagcctgttcctgtgtggggtcttactcggtaacttcctcca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgagaggtgagaatgtgccagcctgttcctgtgtggggtcttactcggcaacttcctcca 500

                                                                       
Query: 301 atatggaggagctgccctgaaccctgccattgctttctgaactctgtccctcacagatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatggaggagctgccctgaaccctgccattgctttctgaactctgtccctcacagatct 560

                                                                       
Query: 361 atcagtatcatgaaggtggctcaggctaaactgatggaaattggtccagatgacatgaac 420
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 561 atcagtatcatgaaggtggctcaggccaaattgatggaaattggtccagatgacatgaac 620

                                                                       
Query: 421 atggaagagtataaggtaagtgtggggctttgtttctttttaattccttccaaaacctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggaagagtataaggtaagtgtggggctttgtttctttttaattccttccaaaacctta 680

                                                                       
Query: 481 cttctagaggcaagtgattcttaagataaaatgaagttttatgttactagactcaactag 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 cttctagaggcaagtgattcttaagataaaatgaagttttatgttaccagactcaactag 740

                                                              
Query: 541 ttccctatgaacttgaaaggagaaggaaaaaaaa----caaagctgagggt 587
           ||||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 741 ttccctatgaacttgaaaggagaaggaaaaaaaaaaaacaaagctgagggt 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)