BAC Information

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BAC

Clone NameMSMg01-142B13
Chromosome9 (Build37)
Map Location 96,206,993 - 96,207,563
singlet/doubletsinglet
Overlap geneTfdp2
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142B13.T7 (MSMg01no142_b13.b1)MSMg01-142B13.TJ (MSMg01no142_b13.g1)
ACCAG346795AG346796
length1,2311,273
length of high quality
(start - end)
629 (87 - 715)572 (116 - 687)
definitionCHROMAT_FILE: MSMg01no142_b13.b1 PHD_FILE: MSMg01no142_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:19 2005CHROMAT_FILE: MSMg01no142_b13.g1 PHD_FILE: MSMg01no142_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTCTTTNNNNGACAGTGGGCGCTATAGACTCCTATGGGAGAGGATCCG
CGGAATTCATGATCGTGGGCCCACCTTTAAACTTCTCTGGCTGTGAAATG
AGTTCCTTGGTCACCATTAATACTGTGTGGAATACCATGACGATAGATAA
GGCATTCTGTCAATCCGTGAATGGTGGTTTTAGCAGAGGCATTACGTGCA
GGAAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAA
ACGCTGTCCTTTCCACGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACC
AGGTTGCTGCCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGCTCAGT
GTTGGTTTCTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTAGCCAG
GTCTGTCTTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCATAACCTC
CATCTCGACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACA
GGGATGGCTGGGAAGAGAGGCTGACTGTCCACAGAACGGGTCAACTTATC
CACTTGATTATTGAACTCCTCCTCGGCTGAAGTCACCTTTTGGTGAGCAT
TTACATGGGACACAAATATCTTCACATCCTTTGCCCATTTGGAGAGATCT
AACCACATACTTCTTCCCCAGATGTCTTTCTCACCAATTTTCCAATTGTG
ATCTTTCCAAGTCCCTGACCATCCAGCCAATCCATTGGCTACAGCCCATG
AGTCAGTGAATAATCGTACATTTGGCCATTTCTTCTTGCAAACAAACTGT
AATACCATGTGTACTGCCCGAAGTTCTGCCCACTGTGAAGATTTTCCTTC
ACCTGTGTCCTTCAGGGTTGTCCCAAAATGGGTTGTAATGTCTTTTTTGT
CTTCTTTTGGGTGTTGCCTGCATTATGTGTTTACACCTCTATTTAACTGT
CTCTTAGCTTTCTCTTCTCTGTTAGCTTATTATATTCAACCCCCCTTGTA
GCTTTTTTTTTTTTTTTTTTCTCTTCTATTGTTTTGTTATATTCTTTTTT
TACCTTTACTCTTTTTTTTTTTCTCTTTTCTTTCTTATTTTTTAGCTCTT
TTTTATATTTGTATTTTTTTCTTACTCTCCTTTTATTCCCTTTCTTTTTT
CTATTATTCACTTCCTGTTTTATTCTCTTTTATTTTATTTTCTTTCTTCG
TTTTTCTTTCTTTTCTTCTTGTTTTCTTCTT
NTTTTTATCTTGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTAAGCAGCCAAGGCTGTTAACACAGAAA
TCCTGTCTCCCTAAAGAAACAAACACAATACATGTGTTTTACCCTTGAAA
TGTGTTTATTGAATTTAACCATCATAATCTTTTATCATGTTTAACTTTTC
TATTCAGTAGTACAGACCAGGCCACCTGTTTAAATACTCTAATTTTGAAA
TAGATTTTTTTAATGTATTATGTTAATTCATTTAAATTCCAAGTCACTTT
TTCATATTTTAAATGACCTCATTTGTTTATTGAACATTACAGCAAATTGC
TTTTAAAAACCTGGTACAGAGAAATCGACAAAATGAACAACAAAACCATT
TTCCTCCAGCTGTGAATTCCACCATTCAGCTGCCATTTATAATCATTACT
ACAAGCAGGAAAACAGTCATAGACTGCAGCATCTCCAGTGACAAGTGAGT
GGGGAACCGGGGAGGGCAAGGGCTGGCCTTCCCTTACTGTTCTTCCGTGT
AAGGATGGCGCACTCCACTGCATGCAGCCCTTTAAGAATGGCTTCCATGG
GGTATGTGAAATGCGTTTTCAGTTGGAGTGAGCTCCCTCCTTCACAGACC
CTTCCTCCATGTCAGACTTGCTTGTGACATGTGTGGTAACTGAGCAAGTA
ACTGCAGTAAGACCATCCTCACGAAGGGCACAGTATGAAAATGTTTCCTT
GGCGAGTTACATGTTATACGTCATTATGAATATATATCACACCATTATCT
GTTGTTAATTCTACTGTTTCTTTTTATTGTGCTATACTTTAATTAACCTT
CCATTTTTTATTTACTTTTTGTCTCTTTTAATTATAGTTCTTTCCCTTAT
TATTGTTCGCTCTATATCTCTTTTTCCCTTCTTTTCTTTATTTCCTATCC
TTTTCTTAATCTTTCTTTTTTTTTCCCTTCTTCTCCTATTTTTCTTATCT
ATTCTTTTCTTCTCTTCATTTTCTTCCTTTAATAAATATCCCTCTCCTCT
TTTTTTTTCTTCTATTATTCTCTCTATTCTTATTCCTCCTCTATCTCTTT
CTATCCCATATTCATTCTTTTCTCTTTCTTATCTCTCTCATTATCTTTTC
CCTTCTCTCGCACTTTTTTATTACATACTACTTTCTTTATTCTCCTTACT
TTCTACGCCTCCTTTTATCCCTCCTAATCATATCTCCTCCCTTCTTATCC
TCTTTCTTTCTTGTGTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_b13.g1 MSMg01no142_b13.g1 CHROMAT_FILE:
MSMg01no142_b13.g1 PHD_FILE: MSMg01no142_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:19 2005
         (572 letters)



>mm_chr9_96206793_96207763
          Length = 971

 Score = 1013 bits (524), Expect = 0.0
 Identities = 560/576 (97%), Gaps = 9/576 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaacaaacacaatacatgtgttttacccttgaaatgtgtttattgaatttaaccatcat 60
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gaaacaaacacaatatatgtgttttacccttgaaatatgtttattgaatttaaccatcat 260

                                                                       
Query: 61  aatcttttatcatgtttaacttttctattcagtagtacagaccaggccacctgtttaaat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aatcttttatcatgtttaacttttctattcagtagtacagaacaggccacctgtttaaat 320

                                                                       
Query: 121 actctaattttgaaatagatttttttaatgtattatgttaattcatttaaattccaagtc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 actctaattttgaaatagatttttt-aatgtattatgttaattcatttaaattccaagtc 379

                                                                       
Query: 181 actttttcatattttaaatgacctcatttgtttattgaacattacagcaaattgctttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actttttcatattttaaatgacctcatttgtttattgaacattacagcaaattgctttta 439

                                                                       
Query: 241 aaaacctggtacagagaaatcgacaaaatgaacaacaaaaccatttt----cctccagct 296
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 440 aaaacctggtacagagaaatcgacaaaatgaacaacaaaacca----gggccctccagct 495

                                                                       
Query: 297 gtgaattccaccattcagctgccatttataatcattactacaagcaggaaaacagtcata 356
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 496 gtgaattccaccattcagctgccatttataatcattaatacaagcaggaaaacagtcata 555

                                                                       
Query: 357 gactgcagcatctccagtgacaagtgagtggggaaccggggagggcaagggctggccttc 416
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 556 gactgcagcatctccagtgacaagtgagtggggagccggggagggcaagggctggccttc 615

                                                                       
Query: 417 ccttactgttcttccgtgtaaggatggcgcactccactgcatgcagccctttaagaatgg 476
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccttactgttctcccgtgtaaggatggcgcactccactgcatgcagccctttaagaatgg 675

                                                                       
Query: 477 cttccatggggtatgtgaaatgcgttttcagttggagtgagctccctccttcacagaccc 536
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 676 cttccatggggtatgtgaaatgcgttttcagttggagtgagctccatccttcacagaccc 735

                                               
Query: 537 ttcctccatgtcagacttgcttgtgacatgtgtggt 572
           ||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttcctccatgtcagacttgcttgtgacatgtgtggt 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space:   540082
Effective search space used:   540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)