BAC Information

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BAC

Clone NameMSMg01-143B19
Chromosome9 (Build37)
Map Location 79,956,201 - 80,127,439
singlet/doubletdoublet
Overlap geneSenp6, LOC100041249, Myo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143B19.T7 (MSMg01no143_b19.b1)MSMg01-143B19.TJ (MSMg01no143_b19.g1)
ACCAG347547AG347548
length693713
length of high quality
(start - end)		344 (55 - 398)496 (77 - 572)
definitionCHROMAT_FILE: MSMg01no143_b19.b1 PHD_FILE: MSMg01no143_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:34 2005CHROMAT_FILE: MSMg01no143_b19.g1 PHD_FILE: MSMg01no143_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,127,096 - 80,127,439)(79,956,201 - 79,956,694)
sequence
TGCGGCGCTATACGACTCCTATTCGAAGAGATCCGCGGAATTCCAGTTAG
CCCATTAAAATTTATAAAAGAGAATATAATTTTTAATACATGAATTCTTA
ATTTTAAAACAATCTTAGGAAACTAATGCTCTATACAGACTGAAAACTAG
TCTATTTGATTGAACAAAAGAATGAAGCTCAGTGGGCTCTGTGAGAGGCA
GCACTTCTAGATGGCAACTTGAAAAGACTCACCTTTCGTATCATCTCTAC
TTTTATGAATCTAAATTAAAGTTTTCTCACTTATGGACAAAGACATGTGT
CAGATATCCACTAAGTCACTGCTTACAACAGAAAAAACAATAACAGAAGT
AACTTAAAAGCCTATTCATTAAATTGTATTACACCCATAAAATAGAATGT
ACCACATTGATTAGAGAGCTGGAATTTAATCTATCCGGCATAAAAATATA
TCTATCCCATAATGTATGCTGATTAAAGGAACATACAGAGACCATTGCTG
TTTTCTTTGCAGTACCAAGGACTGAACCCAGGGCCTTGCACGTATTCTAC
CACTGGACTAAGCTACAGCCCTCCCTAGCCCGTGGCTATATAGTTCAGGC
TGGCTTTGGATTTAGTTCTCAGGTCTGCTCATAGGGAAAAAAAAAAAGGT
AAAGGTTGCCTGCCACTGTCATAATTTTTGACCATGAAATGCC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACCTACAGATTTCAGCCACAAT
GATCAATTATATTTGAAAAAGGAAAATTTCTTCTGTCAAAATTAGATCAG
TCTTGACCATTTACCTTCTTCTTGTTTGTTTTAATTTACTAAATGACACT
GTAAAATAGCTACTTACATAGCTTTTATAGTATATTGGGCAACATAAGCA
ATCTAGAAATGATTTAAAATATTGGCAGATGTGCACACAATAGAAGTTTA
AGTACTACATTTCTTACAGGTGACAGGCGTTTGCAAATTCTAGTCTTCAG
GAATCTTGTAATTAGGCCCTTCTCATATACAAAGTAGAAGACAGTATGCT
CAATTTAAAATGTTACGCACACCATTATATTTACTTGTATTTTAAATAGT
ATTTGTATGTAAGAAGCATTTGGCAGAAAATCTGAGTGGAGTAATGCACA
TTTTCCCTTATAAAATCTAGTGAAAATTTGTTCATGAGGAAAGGACTTTT
CCTTTATGTGCATAACTGAGGTTAATTTAATTATAAATCATCTTGCGTAT
TGTCACCAGTCTTTTTTTCCCTGTACTTGCAGTGCTCAATCATATGCACT
GTTGTGATTTCCTTGCCTTTCTGGTCTTTTTATTTATCGCTTAGGCTTTT
TTTTATTTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_b19.b1 MSMg01no143_b19.b1 CHROMAT_FILE:
MSMg01no143_b19.b1 PHD_FILE: MSMg01no143_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:34 2005
         (344 letters)



>mm_chr9_80126896_80127639
          Length = 744

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaatttataaaagagaatataatttttaatacatgaattcttaattttaaaacaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttaaaatttataaaagagaatataatttttaatacatgaattcttaattttaaaacaatc 485

                                                                       
Query: 61  ttaggaaactaatgctctatacagactgaaaactagtctatttgattgaacaaaagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttaggaaactaatgctctatacagactgaaaactagtctatttgattgaacaaaagaatg 425

                                                                       
Query: 121 aagctcagtgggctctgtgagaggcagcacttctagatggcaacttgaaaagactcacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagctcagtgggctctgtgagaggcagcacttctagatggcaacttgaaaagactcacct 365

                                                                       
Query: 181 ttcgtatcatctctacttttatgaatctaaattaaagttttctcacttatggacaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttcgtatcatctctacttttatgaatctaaattaaagttttctcacttatggacaaagac 305

                                                                       
Query: 241 atgtgtcagatatccactaagtcactgcttacaacagaaaaaacaataacagaagtaact 300
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 304 atgtgtcagatatccactaagtcactgcttaaaacagaaaaaacagtaacagaagtaact 245

                                                       
Query: 301 taaaagcctattcattaaattgtattacacccataaaatagaat 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taaaagcctattcattaaattgtattacacccataaaatagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no143_b19.g1 MSMg01no143_b19.g1 CHROMAT_FILE:
MSMg01no143_b19.g1 PHD_FILE: MSMg01no143_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:34 2005
         (496 letters)



>mm_chr9_79956001_79956896
          Length = 896

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacctacagatttcagccacaatgatcaattatatttgaaaaaggaaaatttcttctgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 acacctacagatttcagccacaatgatcaattatatttgaaaaaggaaaatttcgtctgt 260

                                                                       
Query: 61  caaaattagatcagtcttgaccatttaccttcttcttgtttgttttaatttactaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaattagatcagtcttgaccatttaccttcttcttgtttgttttaatttactaaatga 320

                                                                       
Query: 121 cactgtaaaatagctacttacatagcttttatagtatattgggcaacataagcaatctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgtaaaatagctacttacatagcttttatagtatattgggcaacataagcaatctag 380

                                                                       
Query: 181 aaatgatttaaaatattggcagatgtgcacacaatagaagtttaagtactacatttctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgatttaaaatattggcagatgtgcacacaatagaagtttaagtactacatttctta 440

                                                                       
Query: 241 caggtgacaggcgtttgcaaattctagtcttcaggaatcttgtaattaggcccttctcat 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtgacaggcatttgcaaattctagtcttcaggaatcttgtaattaggcccttctcat 500

                                                                       
Query: 301 atacaaagtagaagacagtatgctcaatttaaaatgttacgcacaccattatatttactt 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 atacaaagtagaagacagtatgctcaatttaaaatgttatgcacaccattatatttactt 560

                                                                       
Query: 361 gtattttaaatagtatttgtatgtaagaagcatttggcagaaaatctgagtggagtaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattttaaatagtatttgtatgtaagaagcatttggcagaaaatctgagtggagtaatg 620

                                                                       
Query: 421 cacattttcccttataaaatctagtgaaaatttgttcatgaggaaaggacttttccttta 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 cacattttcccttataaaatctagtgaaaatttgtttatgaggaaaggacttttccttta 680

                         
Query: 481 tgtgcataactgag 494
           ||||||||||||||
Sbjct: 681 tgtgcataactgag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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