BAC Information

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BAC

Clone NameMSMg01-143K02
Chromosome9 (Build37)
Map Location 36,208,279 - 36,208,519
singlet/doubletsinglet
Overlap genenone
Upstream geneCdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485
Downstream geneEG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K02.T7 (MSMg01no143_k02.b1)MSMg01-143K02.TJ (MSMg01no143_k02.g1)
ACCAG347926AG347927
length687683
length of high quality
(start - end)
362 (44 - 405)344 (75 - 418)
definitionCHROMAT_FILE: MSMg01no143_k02.b1 PHD_FILE: MSMg01no143_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:14 2005CHROMAT_FILE: MSMg01no143_k02.g1 PHD_FILE: MSMg01no143_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAAATTTGCGGCGCTAAACGACTCCTATATTCCGAGAATCCGCGGAAT
TCCACATCATTTCCCTGTGCTCCCAGCTCTGCACAGTGATTTTGTAATGT
ATGTCTCTTTCTCCATCCCATAAAAAGATCTATAAATCAGCTTCAAAGCC
TATCTTCTGGCTAGCCTTATTTCTGTTACTCCTGGATTGTCTGTCACCAA
GAAATACCCAGATCTCCATAGTCTTAAAATTAACATAAGAGTCAAGATAT
TAGTGTTGTAAGCCTAACAGAAATATAATTTAAACAATGATCTATTTTTT
TACTTGTCAATTTAGATTTTGACCTGTTTGTTTTCCGCTTACTATTCTAT
TTTCTTTCTCACCTCCTGTTACTCAATTGAACCATTTTGGCTTTCTAATG
TGTTATTTGGTTCACACACCCCCTTGGATCCTTACACTAAAGTTTTGTGT
TCTAGAGACATAATCCCCAACATGGTAGTATGGCCTTGATGCCTTGTGCA
ACATGTTGAACTATTCCTAGTTCCTTGAGGGCTTCTTCACTCTTCCATAA
AAGTACTGTTAATCTGGTATAATAAATTTATTCCTCCATCAACTGAATGA
TTTCTTATACATCTCTGTCCCTTCTGCACGCATTGAGGATTCCCTTTTTA
TTTCAGGACTGACAAAAAATCAAAAAAATTACTTTTA
CACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATTCTTCAAATGAGAAGCATTTGC
ATTAAGAACATGAAATACACATTGAAAGAACATGTAAGACATTTCTATTA
ATTAAAAGGGAACAAGACATATTTGCATGAAATCTCTTAAATGCATCACA
AACATAAATTATATTGCATTTTTACTATTTTATATTATAAAACTTTCATG
TTTTAAAAGGCATTTCAGAAAAATGAACTAATAGCACATATATTTTGATA
TAAAGATCTTTAACGCCCTTCCGCTCGACTCGAGACTCGAGCCCCGGGCT
ACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGTACT
CCCCACGGGACCCTAACACCTCTGATGATTGGAACACAGCGCCTGCCCCA
ATCCAATTGCGTGGAACTTGAGACTGCGGCACATAGGGAAGCAGGCTACC
CGGGGCTGATCTGGGGCACAAGTCCCTTCCGCTCGACTCGAGACTCGACC
CCCGGGCTACCTTGTCAGCAGAGTCTTGCCCAACATCCGCAAGGGCCCAT
ACGATATTCCCCACGTTATCCTAATACCTCTGGTGAGTGCAATACAGCGC
CTGCCCCAATCTAATTGCGCGTAACTTGTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k02.g1 MSMg01no143_k02.g1 CHROMAT_FILE:
MSMg01no143_k02.g1 PHD_FILE: MSMg01no143_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:14 2005
         (344 letters)



>mm_chr9_36208079_36208823
          Length = 745

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattcttcaaatgagaagcatttgcattaagaacatgaaatacacattgaaagaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcttcaaatgagaagcatttgcattaagaacatgaaatacacattgaaagaacatg 382

                                                                       
Query: 61  taagacatttctattaattaaaagggaacaagacatatttgcatgaaatctcttaaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagacatttctattaattaaaagggaacaagacatatttgcatgaaatctcttaaatgc 322

                                                                       
Query: 121 atcacaaacataaattatattgcatttttact-attttatattataaaactttcatgttt 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 atcacaaacataaattatattgcatttttacttattttatattataaaactttcatgttt 262

                                                                       
Query: 180 taaaaggcatttcagaaaaatgaactaatagcacatatattttgatataaagatctttaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaggcatttcagaaaaatgaactaatagcacatatattttgatataaagatctttaa 202

            
Query: 240 c 240
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)