Query= MSMg01no143_l06.b1 MSMg01no143_l06.b1 CHROMAT_FILE:
MSMg01no143_l06.b1 PHD_FILE: MSMg01no143_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:19 2005
(599 letters)
>mm_chr9_7866307_7867305
Length = 999
Score = 1075 bits (556), Expect = 0.0
Identities = 577/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 7 gaattcctggaagcca-gaatttgtccaaataacagaaaccaagtccactaccaccacca 65
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctggaagcaaagaatttgtccaaataacagaaaccaagtccactaccaccacca 265
Query: 66 ccaccaccaccccaccctgcatatcatcatggatgaagctgctctcatctgtgaagtaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaccaccaccccaccctgcatatcatcatggatgaagctgctctcatctgtgaagtaaa 325
Query: 126 tggactcagtatccagccaggggatgttgggtattgcctaatgttttgaacatgccccaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggactcagtatccagccaggggatgttgggtattgcctaatgttttgaacatgccccaa 385
Query: 186 aactatagagcaatcatgctgtatgtctgaggatgggtccagtagcagggtggctgggtt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aactatagagcaatcatgctgtatgtctgaggatgggtccagtagcagggtggctgggtt 445
Query: 246 cagggcagacaatggattatatcttatacaggaggattcaaaagcagtatttggaatggt 305
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 cagggcagacaatggattatatcttatacaggaggattcaaaagcagaatttggaatggt 505
Query: 306 acaagtctagcattgaatagccattggctgggtggattcttgagaatcctctcaatatcg 365
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accagtctagcattgaatagccattggctgggtggattcttgagaatcctctcaatatcg 565
Query: 366 tgggggccagcgatacaagttcctgccccatggttatcttgtcagcatccttggccagca 425
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tggggggtagcgatacaagttcctgccccatggttatcttgtcagcatccttggccagca 625
Query: 426 gagtggtggcagctataatccagagacaggctggccatctctaagacacttaatccagct 485
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 626 gagtggtggcagctataatccagagacaggctggccatctctaagacacctaatccagct 685
Query: 486 tcttagacaaataggccacaggtcttttccatgggcctaaagtttggatgagcacccact 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcttagacaaataggccacaggtcttttccatgggcctaaagtttggatgagcacccact 745
Query: 546 ttgccaaccattttcttttatccatatacaggtgggaaggtctg 589
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgccaaccattttcttttatccatatacaggtgggaaggtctg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_l06.g1 MSMg01no143_l06.g1 CHROMAT_FILE:
MSMg01no143_l06.g1 PHD_FILE: MSMg01no143_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:20 2005
(549 letters)
>mm_chr9_7987720_7988668
Length = 949
Score = 1025 bits (530), Expect = 0.0
Identities = 545/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 1 agtgaatc-tttccccccaagattttacctggggactcctgagggtctgtcagtcaaccc 59
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agtgaatcttttccacccaagattttacctggggactcctgagggtctgtcagtcaaccc 758
Query: 60 aactctatccttagcagtattttcattctgagacgtgatttaagtttcccaagctggcct 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 757 aactctatccttagcagtattttcattctgagccgtgatttaagtttcccaagctggcct 698
Query: 120 tgaccttagtctcagtctcccacatgactgggattatcgactcggaccaccaggcctggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgaccttagtctcagtctcccacatgactgggattatcgactcggaccaccaggcctggc 638
Query: 180 tggctaagttcagatatttctatagcagtatggatctgttgtttgactagactacaggct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tggctaagttcagatatttctatagcagtatggatctgttgtttgactagactacaggct 578
Query: 240 taactgttgtactatgaagaaacatgaggttgttaagtaatagtgttgcacagtgttcat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 taactgttgtactatgaagaaacatgaggttgttaagtaatagtgttgcacagtgttcat 518
Query: 300 gtgcctaggcaggatctacaaggatgtgcataggaatcaagtgtctggactcactcagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtgcctaggcaggatctacaaggatgtgcataggaatcaagtgtctggactcactcagaa 458
Query: 360 tgcaattgcagtgggacatacagcatatgtatctttatttgtacttatttactaacattc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgcaattgcagtgggacatacagcatatgtatctttatttgtacttatttactaacattc 398
Query: 420 tgtatccaaacctatcaggaccctcctgtctctgccttccacctcatcaatgcttgggtt 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 tgtatccaaacctatcaggaccctcctgtctctgccttccacctcatcagtgcttgggtt 338
Query: 480 ataggtatgcaccaccatacacactttttaatgtaagttctgaggaaccagactcatgtc 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ataggtatgcaccaccacacacactttttaatgtaagttctgaggaaccagactcatgtc 278
Query: 540 ctatttccta 549
||||||||||
Sbjct: 277 ctatttccta 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
