BAC Information

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BAC

Clone NameMSMg01-144O13
Chromosome9 (Build37)
Map Location 74,838,913 - 74,839,274
singlet/doubletsinglet
Overlap geneBC031353
Upstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
Downstream geneArpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144O13.T7 (MSMg01no144_o13.b1)MSMg01-144O13.TJ (MSMg01no144_o13.g1)
ACCAG348848AG348849
length699701
length of high quality
(start - end)
366 (45 - 410)594 (77 - 670)
definitionCHROMAT_FILE: MSMg01no144_o13.b1 PHD_FILE: MSMg01no144_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:51 2005CHROMAT_FILE: MSMg01no144_o13.g1 PHD_FILE: MSMg01no144_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTTATCCCAACTGGAAACCATTACAGAAAACTGAAACTGGAT
GCAATGCAGAAATCAACAGATATAGCTCCATCACAGCTTCTGCGCTTATG
ACTCAGGGGACATCGAAGAAGAGGGAACAGAAAGACTGTAAAAGTCAGTG
TGCCAAGAGGTCTGCTGTCCAAGAGTCTCTCCTAGACGCAGCCACTGGCA
TATCAGTAGACATTTCAATGTGGAGGGAGGGTTTACTGGGTCTCACCCTT
AGACACTAAGAATTTTGGAAGGGGGAGAATTACCCTCTCCTAAGAATGAG
CCCCTTGATTGGTTATACAATGCAAAATGATCAGCTTTGAAACCATATAC
ACACACACAAACAAAACTGCGCTCAGCAGGTATATTTCTACATATCTGTA
CATGCACACACCCCAATAATAATAATCAAAGACAAGGAGGCTATCGAATT
AAGAAGGGGGGATATAAGAGGGGTTCCAGGGACAGTGGCTGGGAAGAGTC
GGAGGAGAAAATTGTATAATATGCGGACATGATACAATTCTATTTCAATT
AAAACATTAAAATGTTAACATCTTTGGCTTTATACATTATCTGAGGTTTA
TGTGAATGAACACATTTTACTAAGTCATTTTTCCACATTGTACATAAAA
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCACTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTACGCTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTACCCAAATGGATGGACCTGGAGGTCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAATATACAATTTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_o13.b1 MSMg01no144_o13.b1 CHROMAT_FILE:
MSMg01no144_o13.b1 PHD_FILE: MSMg01no144_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:51 2005
         (366 letters)



>mm_chr9_74838518_74839284
          Length = 767

 Score =  584 bits (302), Expect = e-171
 Identities = 347/362 (95%), Gaps = 1/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctttatcccaactggaaaccattacagaaaactgaaactggatgcaatgca 64
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaatcctctctttataccaactggaaaccattacagaaaactgaaactggatgcaatgca 698

                                                                       
Query: 65  gaaatcaacagatatagctccatcacagcttctgcgcttatgactcaggggacatcgaag 124
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 697 gaaattaacagatatagctccatcacagcttctgtgcttatgactcaggggacatcgaag 638

                                                                       
Query: 125 aagagggaacagaaagactgtaaaagtcagtgtgccaagaggtctgctgtccaagagtct 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 637 aagagggaacagaaagactgtaaaagccagtgtgccaagaggtctgctgtcaaagagtct 578

                                                                       
Query: 185 ctcctagacgcagccactggcatatcagtagacatttcaatgtggagggagggtttactg 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctcctagacgtagccactggcatatcagtagacatttcaatgtggagggagggtttactg 518

                                                                       
Query: 245 ggtctcacccttagacactaagaatt-ttggaagggggagaattaccctctcctaagaat 303
           ||||||||||| ||||||| |||| | ||||||| |||||||||||||||||||||| ||
Sbjct: 517 ggtctcaccctcagacacttagaactgttggaagagggagaattaccctctcctaaggat 458

                                                                       
Query: 304 gagccccttgattggttatacaatgcaaaatgatcagctttgaaaccatatacacacaca 363
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 457 gagccccttgattggctatacaatgcaaaatgatcagctttgaaaccatacacacacaca 398

             
Query: 364 ca 365
           ||
Sbjct: 397 ca 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 767
Length adjustment: 9
Effective length of query: 357
Effective length of database: 758
Effective search space:   270606
Effective search space used:   270606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)